Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 AC106820.2-201ENST00000563775 3264 ntBASIC6.09□□□□□ -1.43
SYNE1Q8NF91 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 MMP23A-201ENST00000234610 1017 ntBASIC6.09□□□□□ -1.43
SYNE1Q8NF91 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 LSR-203ENST00000360798 1963 ntTSL 2 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 AC245052.3-201ENST00000450182 901 ntBASIC6.09□□□□□ -1.43
SYNE1Q8NF91 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 AC005229.4-201ENST00000610085 2198 ntBASIC6.09□□□□□ -1.43
SYNE1Q8NF91 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC6.09□□□□□ -1.43
SYNE1Q8NF91 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
SYNE1Q8NF91 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 AC073195.1-201ENST00000607241 877 ntBASIC6.08□□□□□ -1.44
SYNE1Q8NF91 Six3os1_6.1-201ENST00000620790 196 ntBASIC6.08□□□□□ -1.44
SYNE1Q8NF91 HTR7P1-201ENST00000538670 1336 ntBASIC6.08□□□□□ -1.44
SYNE1Q8NF91 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 VIPR2-201ENST00000262178 3944 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
SYNE1Q8NF91 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 23.9 ms