Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC24.28■■□□□ 1.48
USP48Q86UV5 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
USP48Q86UV5 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC24.27■■□□□ 1.48
USP48Q86UV5 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC24.27■■□□□ 1.48
USP48Q86UV5 PLK5-205ENST00000642079 1969 ntBASIC24.27■■□□□ 1.48
USP48Q86UV5 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
USP48Q86UV5 RBM17P1-201ENST00000453646 1190 ntBASIC24.27■■□□□ 1.48
USP48Q86UV5 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC24.27■■□□□ 1.48
USP48Q86UV5 NME3-204ENST00000563498 920 ntTSL 2 BASIC24.27■■□□□ 1.48
USP48Q86UV5 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC24.27■■□□□ 1.48
USP48Q86UV5 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC24.27■■□□□ 1.48
USP48Q86UV5 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
USP48Q86UV5 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
USP48Q86UV5 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC24.27■■□□□ 1.48
USP48Q86UV5 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC24.27■■□□□ 1.48
USP48Q86UV5 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
USP48Q86UV5 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
USP48Q86UV5 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
USP48Q86UV5 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
USP48Q86UV5 AC079598.2-202ENST00000546624 1451 ntBASIC24.26■■□□□ 1.47
USP48Q86UV5 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
USP48Q86UV5 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP48Q86UV5 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC24.26■■□□□ 1.47
USP48Q86UV5 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC24.26■■□□□ 1.47
USP48Q86UV5 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP48Q86UV5 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP48Q86UV5 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
USP48Q86UV5 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC24.26■■□□□ 1.47
USP48Q86UV5 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC24.26■■□□□ 1.47
USP48Q86UV5 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC24.26■■□□□ 1.47
USP48Q86UV5 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC24.26■■□□□ 1.47
USP48Q86UV5 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC24.26■■□□□ 1.47
USP48Q86UV5 AC073314.1-201ENST00000568729 2216 ntBASIC24.26■■□□□ 1.47
USP48Q86UV5 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC24.26■■□□□ 1.47
USP48Q86UV5 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP48Q86UV5 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC24.25■■□□□ 1.47
USP48Q86UV5 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP48Q86UV5 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP48Q86UV5 AC006128.1-201ENST00000624704 1661 ntBASIC24.25■■□□□ 1.47
USP48Q86UV5 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP48Q86UV5 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP48Q86UV5 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
USP48Q86UV5 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
USP48Q86UV5 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC24.25■■□□□ 1.47
USP48Q86UV5 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP48Q86UV5 KRT16P5-201ENST00000455284 522 ntBASIC24.25■■□□□ 1.47
USP48Q86UV5 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP48Q86UV5 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC24.25■■□□□ 1.47
USP48Q86UV5 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC24.25■■□□□ 1.47
USP48Q86UV5 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC24.25■■□□□ 1.47
USP48Q86UV5 AP005212.1-201ENST00000581547 1997 ntBASIC24.25■■□□□ 1.47
USP48Q86UV5 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
USP48Q86UV5 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
USP48Q86UV5 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP48Q86UV5 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP48Q86UV5 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP48Q86UV5 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
USP48Q86UV5 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC24.24■■□□□ 1.47
USP48Q86UV5 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
USP48Q86UV5 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC24.24■■□□□ 1.47
USP48Q86UV5 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC24.24■■□□□ 1.47
USP48Q86UV5 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC24.24■■□□□ 1.47
USP48Q86UV5 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC24.24■■□□□ 1.47
USP48Q86UV5 AP000525.1-201ENST00000608286 694 ntBASIC24.24■■□□□ 1.47
USP48Q86UV5 AL356652.1-201ENST00000615962 565 ntBASIC24.24■■□□□ 1.47
USP48Q86UV5 DECR2-212ENST00000627716 352 ntTSL 2 BASIC24.24■■□□□ 1.47
USP48Q86UV5 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP48Q86UV5 SRI-203ENST00000419179 1307 ntTSL 2 BASIC24.24■■□□□ 1.47
USP48Q86UV5 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC24.24■■□□□ 1.47
USP48Q86UV5 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC24.24■■□□□ 1.47
USP48Q86UV5 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP48Q86UV5 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
USP48Q86UV5 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP48Q86UV5 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
USP48Q86UV5 GABARAPL3-202ENST00000624044 1851 ntBASIC24.24■■□□□ 1.47
USP48Q86UV5 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
USP48Q86UV5 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC24.23■■□□□ 1.47
USP48Q86UV5 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
USP48Q86UV5 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
USP48Q86UV5 CRAT-202ENST00000393384 973 ntTSL 2 BASIC24.23■■□□□ 1.47
USP48Q86UV5 PGM5P4-201ENST00000421970 445 ntBASIC24.23■■□□□ 1.47
USP48Q86UV5 HES2-206ENST00000489730 730 ntTSL 2 BASIC24.23■■□□□ 1.47
USP48Q86UV5 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC24.23■■□□□ 1.47
USP48Q86UV5 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
USP48Q86UV5 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
USP48Q86UV5 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
USP48Q86UV5 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
USP48Q86UV5 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
USP48Q86UV5 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP48Q86UV5 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP48Q86UV5 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC24.22■■□□□ 1.47
USP48Q86UV5 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP48Q86UV5 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC24.22■■□□□ 1.47
USP48Q86UV5 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC24.22■■□□□ 1.47
USP48Q86UV5 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC24.22■■□□□ 1.47
USP48Q86UV5 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP48Q86UV5 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
USP48Q86UV5 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
USP48Q86UV5 LINC01568-207ENST00000641790 1380 ntBASIC24.22■■□□□ 1.47
USP48Q86UV5 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC24.22■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms