Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
RFX4Q33E94 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFX4Q33E94 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
RFX4Q33E94 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX4Q33E94 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX4Q33E94 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX4Q33E94 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.37■□□□□ 0.53
RFX4Q33E94 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX4Q33E94 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.37■□□□□ 0.53
RFX4Q33E94 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX4Q33E94 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX4Q33E94 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
RFX4Q33E94 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.37■□□□□ 0.53
RFX4Q33E94 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RFX4Q33E94 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX4Q33E94 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
RFX4Q33E94 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX4Q33E94 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX4Q33E94 MIR638-201ENST00000385237 100 ntBASIC18.37■□□□□ 0.53
RFX4Q33E94 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RFX4Q33E94 AC091799.1-201ENST00000422823 811 ntBASIC18.37■□□□□ 0.53
RFX4Q33E94 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC18.37■□□□□ 0.53
RFX4Q33E94 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.37■□□□□ 0.53
RFX4Q33E94 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC18.37■□□□□ 0.53
RFX4Q33E94 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX4Q33E94 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
RFX4Q33E94 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.37■□□□□ 0.53
RFX4Q33E94 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.37■□□□□ 0.53
RFX4Q33E94 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX4Q33E94 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RFX4Q33E94 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC18.37■□□□□ 0.53
RFX4Q33E94 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFX4Q33E94 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFX4Q33E94 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RFX4Q33E94 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.36■□□□□ 0.53
RFX4Q33E94 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFX4Q33E94 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFX4Q33E94 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
RFX4Q33E94 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFX4Q33E94 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFX4Q33E94 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
RFX4Q33E94 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC18.36■□□□□ 0.53
RFX4Q33E94 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC18.36■□□□□ 0.53
RFX4Q33E94 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
RFX4Q33E94 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.36■□□□□ 0.53
RFX4Q33E94 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RFX4Q33E94 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
RFX4Q33E94 SLC7A5P1-201ENST00000568957 537 ntBASIC18.36■□□□□ 0.53
RFX4Q33E94 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.36■□□□□ 0.53
RFX4Q33E94 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC18.36■□□□□ 0.53
RFX4Q33E94 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
RFX4Q33E94 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RFX4Q33E94 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX4Q33E94 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RFX4Q33E94 TP73-202ENST00000354437 2140 ntTSL 5 BASIC18.35■□□□□ 0.53
RFX4Q33E94 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
RFX4Q33E94 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX4Q33E94 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.35■□□□□ 0.53
RFX4Q33E94 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.35■□□□□ 0.53
RFX4Q33E94 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RFX4Q33E94 RBM17P2-201ENST00000616397 1405 ntBASIC18.35■□□□□ 0.53
RFX4Q33E94 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC18.35■□□□□ 0.53
RFX4Q33E94 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX4Q33E94 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX4Q33E94 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX4Q33E94 YBX1P1-201ENST00000445822 960 ntBASIC18.35■□□□□ 0.53
RFX4Q33E94 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC18.35■□□□□ 0.53
RFX4Q33E94 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
RFX4Q33E94 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.35■□□□□ 0.53
RFX4Q33E94 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC18.35■□□□□ 0.53
RFX4Q33E94 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.35■□□□□ 0.53
RFX4Q33E94 FAM21FP-204ENST00000608637 956 ntBASIC18.35■□□□□ 0.53
RFX4Q33E94 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.35■□□□□ 0.53
RFX4Q33E94 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX4Q33E94 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX4Q33E94 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX4Q33E94 LETM1P2-201ENST00000597330 2178 ntBASIC18.35■□□□□ 0.53
RFX4Q33E94 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX4Q33E94 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX4Q33E94 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
RFX4Q33E94 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC18.35■□□□□ 0.53
RFX4Q33E94 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX4Q33E94 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX4Q33E94 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RFX4Q33E94 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFX4Q33E94 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
RFX4Q33E94 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.34■□□□□ 0.53
RFX4Q33E94 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFX4Q33E94 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RFX4Q33E94 AC079598.2-202ENST00000546624 1451 ntBASIC18.34■□□□□ 0.53
RFX4Q33E94 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFX4Q33E94 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RFX4Q33E94 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
RFX4Q33E94 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.34■□□□□ 0.53
RFX4Q33E94 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
RFX4Q33E94 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RFX4Q33E94 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.34■□□□□ 0.53
RFX4Q33E94 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
RFX4Q33E94 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RFX4Q33E94 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 14.5 ms