Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH4P55283 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.28■□□□□ 0.84
CDH4P55283 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CDH4P55283 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.28■□□□□ 0.84
CDH4P55283 F2R-202ENST00000505600 442 ntTSL 2 BASIC20.28■□□□□ 0.84
CDH4P55283 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.28■□□□□ 0.84
CDH4P55283 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC20.28■□□□□ 0.84
CDH4P55283 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.28■□□□□ 0.84
CDH4P55283 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.28■□□□□ 0.84
CDH4P55283 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.28■□□□□ 0.84
CDH4P55283 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.28■□□□□ 0.84
CDH4P55283 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH4P55283 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH4P55283 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH4P55283 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC20.28■□□□□ 0.84
CDH4P55283 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH4P55283 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CDH4P55283 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH4P55283 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CDH4P55283 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
CDH4P55283 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH4P55283 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDH4P55283 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.27■□□□□ 0.84
CDH4P55283 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH4P55283 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH4P55283 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.27■□□□□ 0.84
CDH4P55283 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDH4P55283 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDH4P55283 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH4P55283 AP006294.2-201ENST00000641667 209 ntBASIC20.27■□□□□ 0.84
CDH4P55283 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDH4P55283 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
CDH4P55283 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH4P55283 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH4P55283 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CDH4P55283 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CDH4P55283 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CDH4P55283 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CDH4P55283 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH4P55283 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
CDH4P55283 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH4P55283 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDH4P55283 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CDH4P55283 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDH4P55283 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
CDH4P55283 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH4P55283 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH4P55283 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDH4P55283 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC20.26■□□□□ 0.83
CDH4P55283 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH4P55283 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CDH4P55283 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.26■□□□□ 0.83
CDH4P55283 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
CDH4P55283 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH4P55283 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC20.26■□□□□ 0.83
CDH4P55283 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
CDH4P55283 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH4P55283 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
CDH4P55283 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
CDH4P55283 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CDH4P55283 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CDH4P55283 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC20.25■□□□□ 0.83
CDH4P55283 EML6-201ENST00000356458 8320 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CDH4P55283 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CDH4P55283 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CDH4P55283 KRT16P5-201ENST00000455284 522 ntBASIC20.25■□□□□ 0.83
CDH4P55283 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH4P55283 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC20.25■□□□□ 0.83
CDH4P55283 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.25■□□□□ 0.83
CDH4P55283 AC004264.1-201ENST00000608354 794 ntBASIC20.25■□□□□ 0.83
CDH4P55283 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.25■□□□□ 0.83
CDH4P55283 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CDH4P55283 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC20.25■□□□□ 0.83
CDH4P55283 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH4P55283 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CDH4P55283 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.25■□□□□ 0.83
CDH4P55283 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH4P55283 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CDH4P55283 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
CDH4P55283 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CDH4P55283 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CDH4P55283 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH4P55283 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC20.24■□□□□ 0.83
CDH4P55283 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH4P55283 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH4P55283 TCF3P1-201ENST00000423021 1937 ntBASIC20.24■□□□□ 0.83
CDH4P55283 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH4P55283 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH4P55283 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CDH4P55283 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.24■□□□□ 0.83
CDH4P55283 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC20.24■□□□□ 0.83
CDH4P55283 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.24■□□□□ 0.83
CDH4P55283 AC066615.1-201ENST00000640911 628 ntBASIC20.24■□□□□ 0.83
CDH4P55283 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH4P55283 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
CDH4P55283 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.24■□□□□ 0.83
CDH4P55283 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH4P55283 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH4P55283 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CDH4P55283 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms