Protein–RNA interactions for Protein: P49761

CLK3, Dual specificity protein kinase CLK3, humanhuman

Known RBP Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3P49761 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLK3P49761 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.72■□□□□ 0.59
CLK3P49761 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.72■□□□□ 0.59
CLK3P49761 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLK3P49761 AC083906.2-201ENST00000511578 360 ntBASIC18.72■□□□□ 0.59
CLK3P49761 ISCU-212ENST00000547005 795 ntTSL 3 BASIC18.72■□□□□ 0.59
CLK3P49761 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
CLK3P49761 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLK3P49761 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLK3P49761 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLK3P49761 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLK3P49761 AC010980.2-201ENST00000587099 1412 ntBASIC18.72■□□□□ 0.59
CLK3P49761 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLK3P49761 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.72■□□□□ 0.59
CLK3P49761 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
CLK3P49761 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
CLK3P49761 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLK3P49761 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLK3P49761 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC18.71■□□□□ 0.59
CLK3P49761 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLK3P49761 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLK3P49761 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLK3P49761 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLK3P49761 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLK3P49761 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC18.71■□□□□ 0.59
CLK3P49761 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CLK3P49761 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC18.71■□□□□ 0.59
CLK3P49761 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLK3P49761 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLK3P49761 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLK3P49761 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLK3P49761 KRT18P68-201ENST00000392293 1000 ntBASIC18.71■□□□□ 0.59
CLK3P49761 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.71■□□□□ 0.59
CLK3P49761 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.71■□□□□ 0.59
CLK3P49761 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
CLK3P49761 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC18.71■□□□□ 0.59
CLK3P49761 AL589743.5-201ENST00000616611 1050 ntBASIC18.71■□□□□ 0.59
CLK3P49761 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC18.71■□□□□ 0.59
CLK3P49761 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLK3P49761 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLK3P49761 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
CLK3P49761 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
CLK3P49761 TRABD-204ENST00000395829 1628 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.58
CLK3P49761 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.58
CLK3P49761 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLK3P49761 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CLK3P49761 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLK3P49761 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLK3P49761 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLK3P49761 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLK3P49761 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.7■□□□□ 0.58
CLK3P49761 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
CLK3P49761 LSM12P1-201ENST00000411836 588 ntBASIC18.7■□□□□ 0.58
CLK3P49761 NCF1B-203ENST00000435988 1254 ntBASIC18.7■□□□□ 0.58
CLK3P49761 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLK3P49761 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.7■□□□□ 0.58
CLK3P49761 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC18.7■□□□□ 0.58
CLK3P49761 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC18.7■□□□□ 0.58
CLK3P49761 CYP2T3P-201ENST00000601990 817 ntBASIC18.7■□□□□ 0.58
CLK3P49761 AL356652.1-201ENST00000615962 565 ntBASIC18.7■□□□□ 0.58
CLK3P49761 AL050303.2-201ENST00000619798 666 ntBASIC18.7■□□□□ 0.58
CLK3P49761 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLK3P49761 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
CLK3P49761 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC18.7■□□□□ 0.58
CLK3P49761 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
CLK3P49761 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.7■□□□□ 0.58
CLK3P49761 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLK3P49761 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLK3P49761 TNXA-203ENST00000507684 2038 ntBASIC18.69■□□□□ 0.58
CLK3P49761 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CLK3P49761 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
CLK3P49761 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.69■□□□□ 0.58
CLK3P49761 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLK3P49761 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
CLK3P49761 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC18.69■□□□□ 0.58
CLK3P49761 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
CLK3P49761 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLK3P49761 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLK3P49761 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLK3P49761 AC093787.1-201ENST00000450396 207 ntBASIC18.69■□□□□ 0.58
CLK3P49761 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.69■□□□□ 0.58
CLK3P49761 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC18.69■□□□□ 0.58
CLK3P49761 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
CLK3P49761 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC18.69■□□□□ 0.58
CLK3P49761 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
CLK3P49761 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
CLK3P49761 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.69■□□□□ 0.58
CLK3P49761 CADPS2-201ENST00000313070 6065 ntTSL 5 BASIC18.69■□□□□ 0.58
CLK3P49761 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLK3P49761 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
CLK3P49761 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
CLK3P49761 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
CLK3P49761 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
CLK3P49761 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.68■□□□□ 0.58
CLK3P49761 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLK3P49761 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
CLK3P49761 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.68■□□□□ 0.58
CLK3P49761 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC18.68■□□□□ 0.58
CLK3P49761 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.68■□□□□ 0.58
CLK3P49761 PHB2-213ENST00000546111 858 ntTSL 2 BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms