Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
SOX3P41225 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
SOX3P41225 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
SOX3P41225 AL512408.1-201ENST00000569378 2000 ntBASIC18.61■□□□□ 0.57
SOX3P41225 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SOX3P41225 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.6■□□□□ 0.57
SOX3P41225 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.6■□□□□ 0.57
SOX3P41225 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC18.6■□□□□ 0.57
SOX3P41225 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SOX3P41225 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SOX3P41225 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SOX3P41225 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
SOX3P41225 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SOX3P41225 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SOX3P41225 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SOX3P41225 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SOX3P41225 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
SOX3P41225 UNC93B4-201ENST00000505679 747 ntBASIC18.6■□□□□ 0.57
SOX3P41225 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC18.6■□□□□ 0.57
SOX3P41225 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SOX3P41225 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.6■□□□□ 0.57
SOX3P41225 AC008403.3-201ENST00000598924 454 ntBASIC18.6■□□□□ 0.57
SOX3P41225 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
SOX3P41225 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SOX3P41225 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
SOX3P41225 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
SOX3P41225 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SOX3P41225 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
SOX3P41225 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC18.6■□□□□ 0.57
SOX3P41225 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.6■□□□□ 0.57
SOX3P41225 MCC-208ENST00000514701 2855 ntTSL 2 BASIC18.6■□□□□ 0.57
SOX3P41225 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
SOX3P41225 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SOX3P41225 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SOX3P41225 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.59■□□□□ 0.57
SOX3P41225 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SOX3P41225 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SOX3P41225 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC18.59■□□□□ 0.57
SOX3P41225 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SOX3P41225 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SOX3P41225 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SOX3P41225 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SOX3P41225 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SOX3P41225 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC18.59■□□□□ 0.57
SOX3P41225 GGT1-206ENST00000404223 952 ntTSL 2 BASIC18.59■□□□□ 0.57
SOX3P41225 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SOX3P41225 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SOX3P41225 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SOX3P41225 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SOX3P41225 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SOX3P41225 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC18.59■□□□□ 0.57
SOX3P41225 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC18.59■□□□□ 0.57
SOX3P41225 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
SOX3P41225 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
SOX3P41225 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
SOX3P41225 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
SOX3P41225 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC18.58■□□□□ 0.57
SOX3P41225 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
SOX3P41225 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SOX3P41225 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
SOX3P41225 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
SOX3P41225 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
SOX3P41225 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC18.58■□□□□ 0.57
SOX3P41225 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.58■□□□□ 0.57
SOX3P41225 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.57
SOX3P41225 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SOX3P41225 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
SOX3P41225 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SOX3P41225 FBL-201ENST00000221801 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SOX3P41225 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SOX3P41225 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SOX3P41225 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SOX3P41225 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.58■□□□□ 0.56
SOX3P41225 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC18.58■□□□□ 0.56
SOX3P41225 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC18.58■□□□□ 0.56
SOX3P41225 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
SOX3P41225 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
SOX3P41225 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC18.58■□□□□ 0.56
SOX3P41225 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
SOX3P41225 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
SOX3P41225 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.58■□□□□ 0.56
SOX3P41225 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.57■□□□□ 0.56
SOX3P41225 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SOX3P41225 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SOX3P41225 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SOX3P41225 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
SOX3P41225 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.57■□□□□ 0.56
SOX3P41225 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SOX3P41225 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SOX3P41225 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
SOX3P41225 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
SOX3P41225 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.57■□□□□ 0.56
SOX3P41225 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.57■□□□□ 0.56
SOX3P41225 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.57■□□□□ 0.56
SOX3P41225 AC005829.2-201ENST00000571422 1056 ntBASIC18.57■□□□□ 0.56
SOX3P41225 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
SOX3P41225 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC18.57■□□□□ 0.56
SOX3P41225 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
SOX3P41225 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC18.57■□□□□ 0.56
SOX3P41225 AL162377.1-201ENST00000618844 1793 ntBASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms