Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHMT2P34897 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SHMT2P34897 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHMT2P34897 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHMT2P34897 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.39■□□□□ 0.69
SHMT2P34897 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHMT2P34897 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHMT2P34897 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHMT2P34897 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHMT2P34897 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHMT2P34897 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SHMT2P34897 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHMT2P34897 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHMT2P34897 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SHMT2P34897 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHMT2P34897 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHMT2P34897 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHMT2P34897 KRT18P29-201ENST00000397031 1267 ntBASIC19.38■□□□□ 0.69
SHMT2P34897 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHMT2P34897 POM121L13P-201ENST00000422362 380 ntBASIC19.38■□□□□ 0.69
SHMT2P34897 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.38■□□□□ 0.69
SHMT2P34897 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.38■□□□□ 0.69
SHMT2P34897 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SHMT2P34897 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC19.38■□□□□ 0.69
SHMT2P34897 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.38■□□□□ 0.69
SHMT2P34897 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC19.38■□□□□ 0.69
SHMT2P34897 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHMT2P34897 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC19.38■□□□□ 0.69
SHMT2P34897 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHMT2P34897 AC120498.8-201ENST00000614275 531 ntBASIC19.38■□□□□ 0.69
SHMT2P34897 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHMT2P34897 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC19.38■□□□□ 0.69
SHMT2P34897 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHMT2P34897 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHMT2P34897 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC19.37■□□□□ 0.69
SHMT2P34897 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHMT2P34897 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHMT2P34897 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHMT2P34897 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHMT2P34897 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHMT2P34897 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
SHMT2P34897 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC19.37■□□□□ 0.69
SHMT2P34897 HES2-206ENST00000489730 730 ntTSL 2 BASIC19.37■□□□□ 0.69
SHMT2P34897 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.37■□□□□ 0.69
SHMT2P34897 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHMT2P34897 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHMT2P34897 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SHMT2P34897 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC19.37■□□□□ 0.69
SHMT2P34897 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.37■□□□□ 0.69
SHMT2P34897 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC19.37■□□□□ 0.69
SHMT2P34897 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SHMT2P34897 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHMT2P34897 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC19.37■□□□□ 0.69
SHMT2P34897 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC19.36■□□□□ 0.69
SHMT2P34897 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHMT2P34897 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC19.36■□□□□ 0.69
SHMT2P34897 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SHMT2P34897 ASB18-201ENST00000409749 1401 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHMT2P34897 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC19.36■□□□□ 0.69
SHMT2P34897 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SHMT2P34897 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHMT2P34897 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHMT2P34897 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC19.36■□□□□ 0.69
SHMT2P34897 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHMT2P34897 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHMT2P34897 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC19.36■□□□□ 0.69
SHMT2P34897 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC19.36■□□□□ 0.69
SHMT2P34897 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19.36■□□□□ 0.69
SHMT2P34897 KLF2-202ENST00000592003 564 ntTSL 3 BASIC19.36■□□□□ 0.69
SHMT2P34897 IL17RC-202ENST00000383812 2384 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHMT2P34897 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHMT2P34897 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.36■□□□□ 0.69
SHMT2P34897 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SHMT2P34897 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SHMT2P34897 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHMT2P34897 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SHMT2P34897 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHMT2P34897 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.35■□□□□ 0.69
SHMT2P34897 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.35■□□□□ 0.69
SHMT2P34897 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SHMT2P34897 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHMT2P34897 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SHMT2P34897 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHMT2P34897 AL020996.1-203ENST00000536896 2307 ntBASIC19.35■□□□□ 0.69
SHMT2P34897 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
SHMT2P34897 SMG8-203ENST00000578922 2178 ntBASIC19.35■□□□□ 0.69
SHMT2P34897 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHMT2P34897 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
SHMT2P34897 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SHMT2P34897 AC128676.1-201ENST00000454392 318 ntBASIC19.35■□□□□ 0.69
SHMT2P34897 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHMT2P34897 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC19.35■□□□□ 0.69
SHMT2P34897 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC19.35■□□□□ 0.69
SHMT2P34897 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.35■□□□□ 0.69
SHMT2P34897 TMEM191A-211ENST00000637163 1067 ntBASIC19.35■□□□□ 0.69
SHMT2P34897 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC19.35■□□□□ 0.69
SHMT2P34897 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHMT2P34897 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHMT2P34897 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SHMT2P34897 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms