Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
VIMP08670 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VIMP08670 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VIMP08670 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VIMP08670 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VIMP08670 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VIMP08670 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
VIMP08670 LRRC4B-202ENST00000599957 3019 ntAPPRIS P1 TSL 3 BASIC19.86■□□□□ 0.77
VIMP08670 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC19.86■□□□□ 0.77
VIMP08670 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC19.86■□□□□ 0.77
VIMP08670 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VIMP08670 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
VIMP08670 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.86■□□□□ 0.77
VIMP08670 GUSBP5-201ENST00000418136 578 ntBASIC19.86■□□□□ 0.77
VIMP08670 AC245052.3-201ENST00000450182 901 ntBASIC19.86■□□□□ 0.77
VIMP08670 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.86■□□□□ 0.77
VIMP08670 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VIMP08670 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC19.86■□□□□ 0.77
VIMP08670 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC19.86■□□□□ 0.77
VIMP08670 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
VIMP08670 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC19.86■□□□□ 0.77
VIMP08670 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
VIMP08670 CBR1-205ENST00000530908 1924 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VIMP08670 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VIMP08670 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VIMP08670 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
VIMP08670 MCU-202ENST00000373053 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VIMP08670 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VIMP08670 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VIMP08670 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
VIMP08670 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
VIMP08670 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VIMP08670 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VIMP08670 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VIMP08670 ZIC1-201ENST00000282928 5241 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VIMP08670 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VIMP08670 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC19.85■□□□□ 0.77
VIMP08670 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.85■□□□□ 0.77
VIMP08670 AL512631.2-201ENST00000604634 923 ntBASIC19.85■□□□□ 0.77
VIMP08670 LTB4R2-202ENST00000528054 3092 ntBASIC19.85■□□□□ 0.77
VIMP08670 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC19.85■□□□□ 0.77
VIMP08670 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VIMP08670 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC19.85■□□□□ 0.77
VIMP08670 AC104581.1-202ENST00000635932 2618 ntBASIC19.85■□□□□ 0.77
VIMP08670 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
VIMP08670 KRT8P36-201ENST00000489121 1440 ntBASIC19.85■□□□□ 0.77
VIMP08670 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VIMP08670 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC19.84■□□□□ 0.77
VIMP08670 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VIMP08670 AEBP2-201ENST00000266508 3620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VIMP08670 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VIMP08670 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VIMP08670 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
VIMP08670 AC008175.2-201ENST00000612840 297 ntBASIC19.84■□□□□ 0.77
VIMP08670 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VIMP08670 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VIMP08670 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
VIMP08670 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VIMP08670 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VIMP08670 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
VIMP08670 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
VIMP08670 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VIMP08670 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC19.84■□□□□ 0.77
VIMP08670 ABHD12B-202ENST00000353130 1477 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
VIMP08670 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VIMP08670 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VIMP08670 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VIMP08670 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VIMP08670 HTR7P1-202ENST00000624664 4411 ntBASIC19.84■□□□□ 0.77
VIMP08670 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
VIMP08670 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VIMP08670 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VIMP08670 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VIMP08670 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.83■□□□□ 0.77
VIMP08670 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
VIMP08670 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VIMP08670 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
VIMP08670 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VIMP08670 POU5F1P4-201ENST00000413175 1085 ntBASIC19.83■□□□□ 0.77
VIMP08670 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC19.83■□□□□ 0.77
VIMP08670 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
VIMP08670 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
VIMP08670 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.76
VIMP08670 FZD10-202ENST00000539839 3282 ntBASIC19.83■□□□□ 0.76
VIMP08670 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VIMP08670 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
VIMP08670 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VIMP08670 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VIMP08670 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC19.83■□□□□ 0.76
VIMP08670 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
VIMP08670 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
VIMP08670 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
VIMP08670 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VIMP08670 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VIMP08670 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VIMP08670 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.82■□□□□ 0.76
VIMP08670 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VIMP08670 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VIMP08670 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC19.82■□□□□ 0.76
VIMP08670 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms