Protein–RNA interactions for Protein: P00558

PGK1, Phosphoglycerate kinase 1, humanhuman

Predictions only

Length 417 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PGK1P00558 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC22.11■■□□□ 1.13
PGK1P00558 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC22.11■■□□□ 1.13
PGK1P00558 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PGK1P00558 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PGK1P00558 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PGK1P00558 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PGK1P00558 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
PGK1P00558 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
PGK1P00558 AK4P3-201ENST00000418260 669 ntBASIC22.11■■□□□ 1.13
PGK1P00558 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC22.11■■□□□ 1.13
PGK1P00558 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC22.11■■□□□ 1.13
PGK1P00558 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PGK1P00558 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC22.11■■□□□ 1.13
PGK1P00558 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC22.11■■□□□ 1.13
PGK1P00558 TRAK2-202ENST00000430254 1436 ntTSL 2 BASIC22.11■■□□□ 1.13
PGK1P00558 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
PGK1P00558 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
PGK1P00558 TFP1-202ENST00000475455 1573 ntBASIC22.11■■□□□ 1.13
PGK1P00558 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC22.11■■□□□ 1.13
PGK1P00558 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC22.11■■□□□ 1.13
PGK1P00558 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
PGK1P00558 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
PGK1P00558 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC22.1■■□□□ 1.13
PGK1P00558 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PGK1P00558 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PGK1P00558 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC22.1■■□□□ 1.13
PGK1P00558 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC22.1■■□□□ 1.13
PGK1P00558 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC22.1■■□□□ 1.13
PGK1P00558 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
PGK1P00558 AC128688.1-201ENST00000487626 519 ntBASIC22.1■■□□□ 1.13
PGK1P00558 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC22.1■■□□□ 1.13
PGK1P00558 SLC25A1P4-201ENST00000567977 778 ntBASIC22.1■■□□□ 1.13
PGK1P00558 AC131212.4-201ENST00000623606 975 ntBASIC22.1■■□□□ 1.13
PGK1P00558 DPP3P2-201ENST00000416030 1696 ntBASIC22.1■■□□□ 1.13
PGK1P00558 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PGK1P00558 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
PGK1P00558 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
PGK1P00558 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PGK1P00558 FP700111.2-201ENST00000619190 1892 ntBASIC22.09■■□□□ 1.13
PGK1P00558 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
PGK1P00558 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PGK1P00558 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PGK1P00558 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC22.09■■□□□ 1.13
PGK1P00558 YBX1P10-201ENST00000444752 975 ntBASIC22.09■■□□□ 1.13
PGK1P00558 KRT18P16-201ENST00000510337 1294 ntBASIC22.09■■□□□ 1.13
PGK1P00558 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
PGK1P00558 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC22.09■■□□□ 1.13
PGK1P00558 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC22.09■■□□□ 1.13
PGK1P00558 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PGK1P00558 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
PGK1P00558 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
PGK1P00558 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PGK1P00558 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PGK1P00558 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PGK1P00558 ERF-202ENST00000440177 2032 ntTSL 2 BASIC22.08■■□□□ 1.13
PGK1P00558 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PGK1P00558 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
PGK1P00558 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PGK1P00558 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
PGK1P00558 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC22.08■■□□□ 1.13
PGK1P00558 BX664615.1-201ENST00000443558 458 ntBASIC22.08■■□□□ 1.13
PGK1P00558 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC22.08■■□□□ 1.13
PGK1P00558 AC022616.7-201ENST00000525383 220 ntBASIC22.08■■□□□ 1.13
PGK1P00558 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC22.08■■□□□ 1.13
PGK1P00558 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
PGK1P00558 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC22.08■■□□□ 1.13
PGK1P00558 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC22.08■■□□□ 1.13
PGK1P00558 AL358472.4-201ENST00000633140 710 ntBASIC22.08■■□□□ 1.13
PGK1P00558 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
PGK1P00558 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC22.08■■□□□ 1.12
PGK1P00558 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC22.08■■□□□ 1.12
PGK1P00558 AC018553.1-201ENST00000616682 1458 ntBASIC22.08■■□□□ 1.12
PGK1P00558 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
PGK1P00558 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PGK1P00558 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
PGK1P00558 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PGK1P00558 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PGK1P00558 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
PGK1P00558 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC22.07■■□□□ 1.12
PGK1P00558 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
PGK1P00558 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
PGK1P00558 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC22.07■■□□□ 1.12
PGK1P00558 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PGK1P00558 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC22.07■■□□□ 1.12
PGK1P00558 TUBB8P6-201ENST00000436895 1288 ntBASIC22.07■■□□□ 1.12
PGK1P00558 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC22.07■■□□□ 1.12
PGK1P00558 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
PGK1P00558 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC22.07■■□□□ 1.12
PGK1P00558 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PGK1P00558 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC22.06■■□□□ 1.12
PGK1P00558 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC22.06■■□□□ 1.12
PGK1P00558 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
PGK1P00558 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
PGK1P00558 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC22.06■■□□□ 1.12
PGK1P00558 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PGK1P00558 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PGK1P00558 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
PGK1P00558 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PGK1P00558 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
PGK1P00558 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 62.7 ms