Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SIX3O95343 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SIX3O95343 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SIX3O95343 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SIX3O95343 SLC16A5-206ENST00000580123 2019 ntAPPRIS P2 TSL 2 BASIC19.34■□□□□ 0.69
SIX3O95343 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
SIX3O95343 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SIX3O95343 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SIX3O95343 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC19.34■□□□□ 0.69
SIX3O95343 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.34■□□□□ 0.69
SIX3O95343 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SIX3O95343 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SIX3O95343 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SIX3O95343 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SIX3O95343 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SIX3O95343 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
SIX3O95343 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.34■□□□□ 0.69
SIX3O95343 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SIX3O95343 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SIX3O95343 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SIX3O95343 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SIX3O95343 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.34■□□□□ 0.69
SIX3O95343 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.33■□□□□ 0.69
SIX3O95343 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
SIX3O95343 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SIX3O95343 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SIX3O95343 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.33■□□□□ 0.69
SIX3O95343 AP001271.2-201ENST00000624018 1556 ntBASIC19.33■□□□□ 0.69
SIX3O95343 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SIX3O95343 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
SIX3O95343 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
SIX3O95343 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SIX3O95343 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SIX3O95343 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC19.33■□□□□ 0.68
SIX3O95343 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SIX3O95343 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC19.33■□□□□ 0.68
SIX3O95343 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.33■□□□□ 0.68
SIX3O95343 CDCA4P2-201ENST00000441182 718 ntBASIC19.33■□□□□ 0.68
SIX3O95343 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC19.33■□□□□ 0.68
SIX3O95343 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC19.33■□□□□ 0.68
SIX3O95343 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC19.33■□□□□ 0.68
SIX3O95343 AC133552.2-202ENST00000575694 574 ntBASIC19.33■□□□□ 0.68
SIX3O95343 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SIX3O95343 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SIX3O95343 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SIX3O95343 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SIX3O95343 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
SIX3O95343 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SIX3O95343 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.33■□□□□ 0.68
SIX3O95343 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
SIX3O95343 AC098818.2-201ENST00000564925 2320 ntBASIC19.33■□□□□ 0.68
SIX3O95343 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC19.33■□□□□ 0.68
SIX3O95343 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.32■□□□□ 0.68
SIX3O95343 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX3O95343 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX3O95343 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SIX3O95343 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC19.32■□□□□ 0.68
SIX3O95343 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX3O95343 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX3O95343 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX3O95343 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX3O95343 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.32■□□□□ 0.68
SIX3O95343 AC023632.3-201ENST00000521633 145 ntBASIC19.32■□□□□ 0.68
SIX3O95343 PHB2-213ENST00000546111 858 ntTSL 2 BASIC19.32■□□□□ 0.68
SIX3O95343 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.32■□□□□ 0.68
SIX3O95343 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX3O95343 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.32■□□□□ 0.68
SIX3O95343 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SIX3O95343 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX3O95343 PHGDH-210ENST00000641115 1638 ntBASIC19.32■□□□□ 0.68
SIX3O95343 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.32■□□□□ 0.68
SIX3O95343 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SIX3O95343 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SIX3O95343 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC19.32■□□□□ 0.68
SIX3O95343 NXN-202ENST00000537628 1340 ntTSL 3 BASIC19.31■□□□□ 0.68
SIX3O95343 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SIX3O95343 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.31■□□□□ 0.68
SIX3O95343 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 LSM12P1-201ENST00000411836 588 ntBASIC19.31■□□□□ 0.68
SIX3O95343 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
SIX3O95343 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC19.31■□□□□ 0.68
SIX3O95343 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.31■□□□□ 0.68
SIX3O95343 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SIX3O95343 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms