Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC17.9■□□□□ 0.46
SSX4O60224 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SSX4O60224 BET1L-204ENST00000410108 637 ntTSL 3 BASIC17.9■□□□□ 0.46
SSX4O60224 FAM201B-201ENST00000458407 597 ntBASIC17.9■□□□□ 0.46
SSX4O60224 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC17.9■□□□□ 0.46
SSX4O60224 SLC7A5P1-201ENST00000568957 537 ntBASIC17.9■□□□□ 0.46
SSX4O60224 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC17.9■□□□□ 0.46
SSX4O60224 ZBTB10-205ENST00000610895 2833 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
SSX4O60224 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SSX4O60224 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.9■□□□□ 0.46
SSX4O60224 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC17.9■□□□□ 0.46
SSX4O60224 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SSX4O60224 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.89■□□□□ 0.46
SSX4O60224 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.46
SSX4O60224 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SSX4O60224 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SSX4O60224 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC17.89■□□□□ 0.46
SSX4O60224 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SSX4O60224 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SSX4O60224 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC17.89■□□□□ 0.45
SSX4O60224 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX4O60224 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX4O60224 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.89■□□□□ 0.45
SSX4O60224 AC098934.4-201ENST00000564127 592 ntBASIC17.89■□□□□ 0.45
SSX4O60224 AC008694.1-202ENST00000636953 945 ntBASIC17.89■□□□□ 0.45
SSX4O60224 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX4O60224 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX4O60224 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SSX4O60224 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SSX4O60224 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SSX4O60224 AC068338.2-201ENST00000563278 1430 ntBASIC17.89■□□□□ 0.45
SSX4O60224 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX4O60224 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SSX4O60224 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX4O60224 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX4O60224 AC005332.7-201ENST00000614046 2005 ntBASIC17.88■□□□□ 0.45
SSX4O60224 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX4O60224 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX4O60224 CYP2T1P-201ENST00000432607 1285 ntBASIC17.88■□□□□ 0.45
SSX4O60224 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SSX4O60224 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC17.88■□□□□ 0.45
SSX4O60224 PHB2-213ENST00000546111 858 ntTSL 2 BASIC17.88■□□□□ 0.45
SSX4O60224 MIR4651-201ENST00000582622 73 ntBASIC17.88■□□□□ 0.45
SSX4O60224 AC008175.2-201ENST00000612840 297 ntBASIC17.88■□□□□ 0.45
SSX4O60224 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC17.88■□□□□ 0.45
SSX4O60224 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX4O60224 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC17.88■□□□□ 0.45
SSX4O60224 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX4O60224 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX4O60224 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX4O60224 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
SSX4O60224 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC17.88■□□□□ 0.45
SSX4O60224 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX4O60224 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC17.88■□□□□ 0.45
SSX4O60224 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SSX4O60224 MKRN4P-201ENST00000444706 1521 ntBASIC17.88■□□□□ 0.45
SSX4O60224 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
SSX4O60224 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SSX4O60224 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SSX4O60224 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.87■□□□□ 0.45
SSX4O60224 AL049812.1-201ENST00000432563 2267 ntBASIC17.87■□□□□ 0.45
SSX4O60224 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SSX4O60224 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC17.87■□□□□ 0.45
SSX4O60224 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SSX4O60224 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SSX4O60224 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SSX4O60224 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC17.87■□□□□ 0.45
SSX4O60224 UQCRFS1P1-201ENST00000435169 820 ntBASIC17.87■□□□□ 0.45
SSX4O60224 MIR4758-201ENST00000577688 71 ntBASIC17.87■□□□□ 0.45
SSX4O60224 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC17.87■□□□□ 0.45
SSX4O60224 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC17.87■□□□□ 0.45
SSX4O60224 TBCB-214ENST00000629269 413 ntTSL 5 BASIC17.87■□□□□ 0.45
SSX4O60224 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SSX4O60224 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SSX4O60224 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SSX4O60224 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC17.87■□□□□ 0.45
SSX4O60224 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
SSX4O60224 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC17.87■□□□□ 0.45
SSX4O60224 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SSX4O60224 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
SSX4O60224 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC17.87■□□□□ 0.45
SSX4O60224 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SSX4O60224 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SSX4O60224 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SSX4O60224 AC121338.2-201ENST00000622535 1744 ntBASIC17.86■□□□□ 0.45
SSX4O60224 BLOC1S3-201ENST00000433642 2601 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SSX4O60224 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
SSX4O60224 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SSX4O60224 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SSX4O60224 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
SSX4O60224 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
SSX4O60224 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC17.86■□□□□ 0.45
SSX4O60224 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SSX4O60224 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC17.86■□□□□ 0.45
SSX4O60224 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SSX4O60224 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SSX4O60224 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC17.86■□□□□ 0.45
SSX4O60224 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.86■□□□□ 0.45
SSX4O60224 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC17.86■□□□□ 0.45
SSX4O60224 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms