Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC22.3■■□□□ 1.16
MSH4O15457 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC22.3■■□□□ 1.16
MSH4O15457 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH4O15457 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH4O15457 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC22.3■■□□□ 1.16
MSH4O15457 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
MSH4O15457 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
MSH4O15457 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
MSH4O15457 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
MSH4O15457 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
MSH4O15457 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
MSH4O15457 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC22.29■■□□□ 1.16
MSH4O15457 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
MSH4O15457 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH4O15457 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH4O15457 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH4O15457 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC22.29■■□□□ 1.16
MSH4O15457 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
MSH4O15457 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
MSH4O15457 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC22.29■■□□□ 1.16
MSH4O15457 USP36-216ENST00000589424 970 ntTSL 5 BASIC22.29■■□□□ 1.16
MSH4O15457 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC22.29■■□□□ 1.16
MSH4O15457 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC22.29■■□□□ 1.16
MSH4O15457 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH4O15457 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH4O15457 MORF4L2-AS1-201ENST00000435306 2086 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
MSH4O15457 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
MSH4O15457 GOLGA2P11-201ENST00000562660 1621 ntBASIC22.28■■□□□ 1.16
MSH4O15457 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC22.28■■□□□ 1.16
MSH4O15457 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC22.28■■□□□ 1.16
MSH4O15457 BAALC-201ENST00000297574 801 ntTSL 3 BASIC22.28■■□□□ 1.16
MSH4O15457 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
MSH4O15457 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC22.28■■□□□ 1.16
MSH4O15457 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC22.28■■□□□ 1.16
MSH4O15457 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC22.28■■□□□ 1.16
MSH4O15457 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC22.28■■□□□ 1.16
MSH4O15457 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC22.28■■□□□ 1.16
MSH4O15457 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH4O15457 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC22.28■■□□□ 1.16
MSH4O15457 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH4O15457 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH4O15457 MME-217ENST00000616757 1315 ntTSL 5 BASIC22.28■■□□□ 1.16
MSH4O15457 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
MSH4O15457 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
MSH4O15457 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC22.28■■□□□ 1.16
MSH4O15457 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC22.27■■□□□ 1.16
MSH4O15457 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC22.27■■□□□ 1.16
MSH4O15457 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC22.27■■□□□ 1.16
MSH4O15457 AP006587.1-201ENST00000534129 1502 ntBASIC22.27■■□□□ 1.16
MSH4O15457 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH4O15457 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.16
MSH4O15457 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
MSH4O15457 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH4O15457 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH4O15457 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
MSH4O15457 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH4O15457 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH4O15457 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC22.27■■□□□ 1.16
MSH4O15457 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
MSH4O15457 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC22.27■■□□□ 1.16
MSH4O15457 AP001271.2-201ENST00000624018 1556 ntBASIC22.27■■□□□ 1.16
MSH4O15457 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC22.27■■□□□ 1.16
MSH4O15457 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
MSH4O15457 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
MSH4O15457 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC22.27■■□□□ 1.16
MSH4O15457 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
MSH4O15457 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
MSH4O15457 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
MSH4O15457 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH4O15457 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH4O15457 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH4O15457 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH4O15457 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC22.26■■□□□ 1.15
MSH4O15457 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC22.26■■□□□ 1.15
MSH4O15457 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH4O15457 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH4O15457 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH4O15457 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC22.26■■□□□ 1.15
MSH4O15457 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC22.26■■□□□ 1.15
MSH4O15457 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC22.26■■□□□ 1.15
MSH4O15457 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH4O15457 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH4O15457 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH4O15457 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
MSH4O15457 FAM102B-201ENST00000370035 5600 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH4O15457 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC22.26■■□□□ 1.15
MSH4O15457 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
MSH4O15457 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH4O15457 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH4O15457 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC22.25■■□□□ 1.15
MSH4O15457 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
MSH4O15457 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH4O15457 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC22.25■■□□□ 1.15
MSH4O15457 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH4O15457 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH4O15457 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH4O15457 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
MSH4O15457 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC22.25■■□□□ 1.15
MSH4O15457 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
MSH4O15457 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC22.25■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms