Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CDX4O14627 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.2■□□□□ 0.66
CDX4O14627 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDX4O14627 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDX4O14627 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDX4O14627 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDX4O14627 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDX4O14627 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CDX4O14627 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDX4O14627 HCG4P8-203ENST00000443049 980 ntBASIC19.19■□□□□ 0.66
CDX4O14627 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
CDX4O14627 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC19.19■□□□□ 0.66
CDX4O14627 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC19.19■□□□□ 0.66
CDX4O14627 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDX4O14627 AL031432.5-201ENST00000641059 760 ntBASIC19.19■□□□□ 0.66
CDX4O14627 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC19.19■□□□□ 0.66
CDX4O14627 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC19.19■□□□□ 0.66
CDX4O14627 AC005332.1-201ENST00000577698 1310 ntBASIC19.19■□□□□ 0.66
CDX4O14627 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CDX4O14627 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDX4O14627 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CDX4O14627 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDX4O14627 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDX4O14627 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDX4O14627 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDX4O14627 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDX4O14627 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDX4O14627 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDX4O14627 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
CDX4O14627 ANKRD20A18P-201ENST00000359341 492 ntBASIC19.18■□□□□ 0.66
CDX4O14627 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC19.18■□□□□ 0.66
CDX4O14627 AL671277.2-201ENST00000458060 996 ntBASIC19.18■□□□□ 0.66
CDX4O14627 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC19.18■□□□□ 0.66
CDX4O14627 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
CDX4O14627 AL023803.3-201ENST00000615559 522 ntBASIC19.18■□□□□ 0.66
CDX4O14627 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.18■□□□□ 0.66
CDX4O14627 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CDX4O14627 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
CDX4O14627 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
CDX4O14627 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.17■□□□□ 0.66
CDX4O14627 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDX4O14627 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.17■□□□□ 0.66
CDX4O14627 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDX4O14627 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDX4O14627 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CDX4O14627 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.17■□□□□ 0.66
CDX4O14627 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDX4O14627 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC19.17■□□□□ 0.66
CDX4O14627 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC19.17■□□□□ 0.66
CDX4O14627 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
CDX4O14627 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC19.17■□□□□ 0.66
CDX4O14627 NDUFV2-AS1-203ENST00000608008 779 ntBASIC19.17■□□□□ 0.66
CDX4O14627 CLN6-214ENST00000636314 442 ntTSL 3 BASIC19.17■□□□□ 0.66
CDX4O14627 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDX4O14627 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDX4O14627 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CDX4O14627 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.17■□□□□ 0.66
CDX4O14627 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDX4O14627 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDX4O14627 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
CDX4O14627 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
CDX4O14627 AC121338.2-201ENST00000622535 1744 ntBASIC19.17■□□□□ 0.66
CDX4O14627 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
CDX4O14627 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC19.17■□□□□ 0.66
CDX4O14627 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC19.17■□□□□ 0.66
CDX4O14627 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.16■□□□□ 0.66
CDX4O14627 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX4O14627 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX4O14627 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
CDX4O14627 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
CDX4O14627 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX4O14627 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX4O14627 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX4O14627 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX4O14627 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC19.16■□□□□ 0.66
CDX4O14627 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX4O14627 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC19.16■□□□□ 0.66
CDX4O14627 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.16■□□□□ 0.66
CDX4O14627 AL359075.1-203ENST00000462729 1002 ntBASIC19.16■□□□□ 0.66
CDX4O14627 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC19.16■□□□□ 0.66
CDX4O14627 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC19.16■□□□□ 0.66
CDX4O14627 HLA-A-209ENST00000638375 975 ntBASIC19.16■□□□□ 0.66
CDX4O14627 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
CDX4O14627 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDX4O14627 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.15■□□□□ 0.66
CDX4O14627 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDX4O14627 GOLGA6L3-201ENST00000507199 1679 ntBASIC19.15■□□□□ 0.66
CDX4O14627 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC19.15■□□□□ 0.66
CDX4O14627 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDX4O14627 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDX4O14627 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC19.15■□□□□ 0.66
CDX4O14627 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDX4O14627 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC19.15■□□□□ 0.66
CDX4O14627 CD81-212ENST00000526072 1172 ntTSL 5 BASIC19.15■□□□□ 0.66
CDX4O14627 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC19.15■□□□□ 0.66
CDX4O14627 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
CDX4O14627 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CDX4O14627 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDX4O14627 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CDX4O14627 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms