Protein–RNA interactions for Protein: E9PIF3

NPIPA2, Nuclear pore complex-interacting protein family member A2, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA2E9PIF3 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPIPA2E9PIF3 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
NPIPA2E9PIF3 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPIPA2E9PIF3 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPIPA2E9PIF3 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPIPA2E9PIF3 GABARAPL3-202ENST00000624044 1851 ntBASIC18.05■□□□□ 0.48
NPIPA2E9PIF3 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPIPA2E9PIF3 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPIPA2E9PIF3 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.05■□□□□ 0.48
NPIPA2E9PIF3 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC18.05■□□□□ 0.48
NPIPA2E9PIF3 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC18.05■□□□□ 0.48
NPIPA2E9PIF3 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
NPIPA2E9PIF3 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 AC012618.2-201ENST00000428058 849 ntBASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 CABP2-204ENST00000636477 941 ntTSL 5 BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NPIPA2E9PIF3 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 AC233702.5-201ENST00000584107 538 ntBASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 LINC01006-201ENST00000333319 2292 ntBASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NPIPA2E9PIF3 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
NPIPA2E9PIF3 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
NPIPA2E9PIF3 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
NPIPA2E9PIF3 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
NPIPA2E9PIF3 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
NPIPA2E9PIF3 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.02■□□□□ 0.48
NPIPA2E9PIF3 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
NPIPA2E9PIF3 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.02■□□□□ 0.48
NPIPA2E9PIF3 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC18.02■□□□□ 0.48
NPIPA2E9PIF3 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
NPIPA2E9PIF3 DPP3P2-201ENST00000416030 1696 ntBASIC18.02■□□□□ 0.47
NPIPA2E9PIF3 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC18.02■□□□□ 0.47
NPIPA2E9PIF3 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
NPIPA2E9PIF3 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.47
NPIPA2E9PIF3 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.02■□□□□ 0.47
NPIPA2E9PIF3 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.02■□□□□ 0.47
NPIPA2E9PIF3 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.02■□□□□ 0.47
NPIPA2E9PIF3 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.01■□□□□ 0.47
NPIPA2E9PIF3 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NPIPA2E9PIF3 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.01■□□□□ 0.47
NPIPA2E9PIF3 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.01■□□□□ 0.47
NPIPA2E9PIF3 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NPIPA2E9PIF3 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NPIPA2E9PIF3 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NPIPA2E9PIF3 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NPIPA2E9PIF3 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
NPIPA2E9PIF3 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
NPIPA2E9PIF3 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
NPIPA2E9PIF3 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
NPIPA2E9PIF3 TSPY7P-201ENST00000431358 1114 ntBASIC18.01■□□□□ 0.47
NPIPA2E9PIF3 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC18.01■□□□□ 0.47
NPIPA2E9PIF3 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC18.01■□□□□ 0.47
NPIPA2E9PIF3 AP001412.1-201ENST00000608405 714 ntBASIC18.01■□□□□ 0.47
NPIPA2E9PIF3 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
NPIPA2E9PIF3 AL121829.2-201ENST00000620908 328 ntBASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms