Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 EPS15-203ENST00000371733 5225 ntAPPRIS P2 TSL 1 (best) BASIC6.02□□□□□ -1.44
FOXA1P55317 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.02□□□□□ -1.45
FOXA1P55317 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
FOXA1P55317 RGPD2-203ENST00000638730 5306 ntAPPRIS ALT2 TSL 5 BASIC6.02□□□□□ -1.45
FOXA1P55317 KYNUP2-201ENST00000582280 1329 ntBASIC6.02□□□□□ -1.45
FOXA1P55317 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
FOXA1P55317 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
FOXA1P55317 PUM1-207ENST00000440538 3936 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
FOXA1P55317 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
FOXA1P55317 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
FOXA1P55317 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC6.02□□□□□ -1.45
FOXA1P55317 C2orf16-201ENST00000408964 6200 ntAPPRIS P2 BASIC6.02□□□□□ -1.45
FOXA1P55317 UGT2B11-201ENST00000446444 2088 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
FOXA1P55317 LZIC-203ENST00000400903 1405 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
FOXA1P55317 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
FOXA1P55317 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC6.02□□□□□ -1.45
FOXA1P55317 MUC5B-204ENST00000529681 17911 ntAPPRIS P1 TSL 5 BASIC6.02□□□□□ -1.45
FOXA1P55317 SNORA43.1-201ENST00000364863 140 ntBASIC6.02□□□□□ -1.45
FOXA1P55317 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC6.02□□□□□ -1.45
FOXA1P55317 AC003045.1-201ENST00000398779 713 ntBASIC6.02□□□□□ -1.45
FOXA1P55317 AL033519.1-201ENST00000407266 307 ntBASIC6.02□□□□□ -1.45
FOXA1P55317 UBTFL2-201ENST00000411859 1191 ntBASIC6.02□□□□□ -1.45
FOXA1P55317 RPL23AP18-201ENST00000416139 468 ntBASIC6.02□□□□□ -1.45
FOXA1P55317 AC002127.1-201ENST00000421305 225 ntBASIC6.02□□□□□ -1.45
FOXA1P55317 C14orf105-202ENST00000422976 1153 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
FOXA1P55317 AC016027.5-201ENST00000427227 210 ntBASIC6.02□□□□□ -1.45
FOXA1P55317 GTF3AP6-201ENST00000432585 986 ntBASIC6.02□□□□□ -1.45
FOXA1P55317 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
FOXA1P55317 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC6.02□□□□□ -1.45
FOXA1P55317 AL450263.1-202ENST00000453199 643 ntTSL 3 BASIC6.02□□□□□ -1.45
FOXA1P55317 AC011625.1-201ENST00000455442 526 ntTSL 4 BASIC6.02□□□□□ -1.45
FOXA1P55317 L29074.1-201ENST00000456072 534 ntTSL 5 BASIC6.02□□□□□ -1.45
FOXA1P55317 RN7SL643P-201ENST00000471845 291 ntBASIC6.02□□□□□ -1.45
FOXA1P55317 AC114728.1-201ENST00000488289 483 ntBASIC6.02□□□□□ -1.45
FOXA1P55317 GM2AP2-201ENST00000491764 562 ntBASIC6.02□□□□□ -1.45
FOXA1P55317 AC122714.1-201ENST00000502510 459 ntBASIC6.02□□□□□ -1.45
FOXA1P55317 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC6.02□□□□□ -1.45
FOXA1P55317 NIFKP4-201ENST00000567275 1192 ntBASIC6.02□□□□□ -1.45
FOXA1P55317 LYRM1-208ENST00000567954 460 ntAPPRIS P1 TSL 1 (best) BASIC6.02□□□□□ -1.45
FOXA1P55317 AC090774.2-201ENST00000584708 322 ntBASIC6.02□□□□□ -1.45
FOXA1P55317 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC6.02□□□□□ -1.45
FOXA1P55317 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC6.02□□□□□ -1.45
FOXA1P55317 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC6.02□□□□□ -1.45
FOXA1P55317 AC068726.1-201ENST00000610993 341 ntBASIC6.02□□□□□ -1.45
FOXA1P55317 AL589743.6-201ENST00000611025 117 ntBASIC6.02□□□□□ -1.45
FOXA1P55317 DRG1-207ENST00000629688 309 ntTSL 5 BASIC6.02□□□□□ -1.45
FOXA1P55317 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
FOXA1P55317 KIAA2012-205ENST00000541917 3543 ntAPPRIS P2 TSL 5 BASIC6.02□□□□□ -1.45
FOXA1P55317 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC6.02□□□□□ -1.45
FOXA1P55317 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC6.01□□□□□ -1.45
FOXA1P55317 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
FOXA1P55317 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
FOXA1P55317 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
FOXA1P55317 AC007159.1-201ENST00000566529 4706 ntBASIC6.01□□□□□ -1.45
FOXA1P55317 DCN-218ENST00000551354 2924 ntTSL 3 BASIC6.01□□□□□ -1.45
FOXA1P55317 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC6.01□□□□□ -1.45
FOXA1P55317 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
FOXA1P55317 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
FOXA1P55317 HHLA3-201ENST00000359875 898 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
FOXA1P55317 MIR1266-201ENST00000408125 84 ntBASIC6.01□□□□□ -1.45
FOXA1P55317 RN7SKP121-201ENST00000410842 305 ntBASIC6.01□□□□□ -1.45
FOXA1P55317 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC6.01□□□□□ -1.45
FOXA1P55317 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC6.01□□□□□ -1.45
FOXA1P55317 LHFPL3-AS1-204ENST00000433514 748 ntTSL 2 BASIC6.01□□□□□ -1.45
FOXA1P55317 MIR4435-2HG-209ENST00000441075 704 ntTSL 5 BASIC6.01□□□□□ -1.45
FOXA1P55317 RPL7L1P3-201ENST00000455249 689 ntBASIC6.01□□□□□ -1.45
FOXA1P55317 AL031275.1-201ENST00000457405 418 ntTSL 3 BASIC6.01□□□□□ -1.45
FOXA1P55317 RARRES2P3-201ENST00000457739 473 ntBASIC6.01□□□□□ -1.45
FOXA1P55317 AC105389.1-201ENST00000510602 561 ntTSL 4 BASIC6.01□□□□□ -1.45
FOXA1P55317 RN7SKP67-201ENST00000515905 235 ntBASIC6.01□□□□□ -1.45
FOXA1P55317 AC008429.4-201ENST00000521201 182 ntBASIC6.01□□□□□ -1.45
FOXA1P55317 AC084851.2-201ENST00000530377 364 ntBASIC6.01□□□□□ -1.45
FOXA1P55317 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC6.01□□□□□ -1.45
FOXA1P55317 AC008055.1-201ENST00000547032 609 ntBASIC6.01□□□□□ -1.45
FOXA1P55317 AC005736.2-201ENST00000571302 774 ntTSL 2 BASIC6.01□□□□□ -1.45
FOXA1P55317 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC6.01□□□□□ -1.45
FOXA1P55317 AC011516.1-201ENST00000599129 180 ntTSL 3 BASIC6.01□□□□□ -1.45
FOXA1P55317 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC6.01□□□□□ -1.45
FOXA1P55317 OR1N2-202ENST00000616791 993 ntAPPRIS P2 BASIC6.01□□□□□ -1.45
FOXA1P55317 AL137067.2-201ENST00000621202 131 ntBASIC6.01□□□□□ -1.45
FOXA1P55317 VIPR1-AS1-221ENST00000626992 602 ntTSL 5 BASIC6.01□□□□□ -1.45
FOXA1P55317 AC099329.1-203ENST00000629885 767 ntTSL 5 BASIC6.01□□□□□ -1.45
FOXA1P55317 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
FOXA1P55317 RXFP2-201ENST00000298386 3319 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
FOXA1P55317 UBR4-204ENST00000375254 15906 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
FOXA1P55317 SMG1P5-202ENST00000529428 4219 ntBASIC6.01□□□□□ -1.45
FOXA1P55317 SMG1P2-201ENST00000566127 4221 ntBASIC6.01□□□□□ -1.45
FOXA1P55317 UPF2-201ENST00000356352 5569 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
FOXA1P55317 AL139039.3-201ENST00000413129 1475 ntTSL 1 (best) BASIC6.01□□□□□ -1.45
FOXA1P55317 ZNF532-201ENST00000336078 6696 ntAPPRIS P1 TSL 1 (best) BASIC6.01□□□□□ -1.45
FOXA1P55317 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC6.01□□□□□ -1.45
FOXA1P55317 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC6.01□□□□□ -1.45
FOXA1P55317 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC6.01□□□□□ -1.45
FOXA1P55317 VPS13B-202ENST00000357162 14019 ntAPPRIS ALT1 TSL 1 (best) BASIC6.01□□□□□ -1.45
FOXA1P55317 MC4R-201ENST00000299766 1666 ntAPPRIS P1 BASIC6.01□□□□□ -1.45
FOXA1P55317 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.01□□□□□ -1.45
FOXA1P55317 METTL9-211ENST00000615720 2890 ntTSL 2 BASIC6□□□□□ -1.45
FOXA1P55317 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC6□□□□□ -1.45
FOXA1P55317 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC6□□□□□ -1.45
FOXA1P55317 NFAT5-202ENST00000354436 13229 ntAPPRIS P4 TSL 1 (best) BASIC6□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 131.9 ms