Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
CUX1P39880 WDR95P-201ENST00000425638 1542 ntBASIC10.26□□□□□ -0.77
CUX1P39880 MAPK10-251ENST00000640858 3052 ntTSL 5 BASIC10.26□□□□□ -0.77
CUX1P39880 INTS2-201ENST00000251334 4255 ntAPPRIS P1 TSL 2 BASIC10.26□□□□□ -0.77
CUX1P39880 AL023806.3-201ENST00000638502 2704 ntBASIC10.26□□□□□ -0.77
CUX1P39880 CYP8B1-201ENST00000316161 3974 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
CUX1P39880 RAB11A-201ENST00000261890 4930 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
CUX1P39880 NPIPB8-202ENST00000529716 2058 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
CUX1P39880 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
CUX1P39880 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
CUX1P39880 AL139415.1-201ENST00000424862 352 ntBASIC10.26□□□□□ -0.77
CUX1P39880 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC10.26□□□□□ -0.77
CUX1P39880 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC10.26□□□□□ -0.77
CUX1P39880 PTMAP6-201ENST00000439110 327 ntBASIC10.26□□□□□ -0.77
CUX1P39880 AC009487.1-201ENST00000444164 403 ntTSL 3 BASIC10.26□□□□□ -0.77
CUX1P39880 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
CUX1P39880 WBP1LP3-201ENST00000523033 208 ntBASIC10.26□□□□□ -0.77
CUX1P39880 RNU4ATAC-201ENST00000580972 127 ntBASIC10.26□□□□□ -0.77
CUX1P39880 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC10.26□□□□□ -0.77
CUX1P39880 AC079395.2-201ENST00000610982 737 ntBASIC10.26□□□□□ -0.77
CUX1P39880 MIR6798-201ENST00000612887 67 ntBASIC10.26□□□□□ -0.77
CUX1P39880 MIR193BHG-214ENST00000641765 509 ntBASIC10.26□□□□□ -0.77
CUX1P39880 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC10.26□□□□□ -0.77
CUX1P39880 SMC2-201ENST00000286398 5992 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
CUX1P39880 PLEKHG4B-201ENST00000283426 11515 ntAPPRIS P2 TSL 1 (best) BASIC10.26□□□□□ -0.77
CUX1P39880 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
CUX1P39880 GPR151-201ENST00000311104 3088 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
CUX1P39880 CCNT2P1-201ENST00000423082 1315 ntBASIC10.26□□□□□ -0.77
CUX1P39880 MELK-211ENST00000545008 2236 ntTSL 2 BASIC10.26□□□□□ -0.77
CUX1P39880 TOM1L1-220ENST00000575333 1849 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
CUX1P39880 COMMD2-203ENST00000473414 3706 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
CUX1P39880 ZNF585A-202ENST00000356958 6822 ntTSL 2 BASIC10.26□□□□□ -0.77
CUX1P39880 CBLB-205ENST00000407712 1493 ntTSL 2 BASIC10.26□□□□□ -0.77
CUX1P39880 ZC3H6-202ENST00000409871 11542 ntAPPRIS P1 TSL 2 BASIC10.25□□□□□ -0.77
CUX1P39880 CSNK1G1-202ENST00000561349 1756 ntTSL 1 (best) BASIC10.25□□□□□ -0.77
CUX1P39880 PGR-202ENST00000325455 13748 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CUX1P39880 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CUX1P39880 RNA5SP394-201ENST00000364216 119 ntBASIC10.25□□□□□ -0.77
CUX1P39880 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC10.25□□□□□ -0.77
CUX1P39880 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC10.25□□□□□ -0.77
CUX1P39880 CYP4F30P-202ENST00000420048 405 ntBASIC10.25□□□□□ -0.77
CUX1P39880 AL627308.1-201ENST00000435693 821 ntBASIC10.25□□□□□ -0.77
CUX1P39880 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC10.25□□□□□ -0.77
CUX1P39880 AL136981.1-203ENST00000451452 3844 ntBASIC10.25□□□□□ -0.77
CUX1P39880 AC023245.1-201ENST00000468501 517 ntBASIC10.25□□□□□ -0.77
CUX1P39880 AC093270.2-201ENST00000486157 792 ntBASIC10.25□□□□□ -0.77
CUX1P39880 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC10.25□□□□□ -0.77
CUX1P39880 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC10.25□□□□□ -0.77
CUX1P39880 AC074087.1-201ENST00000512059 724 ntBASIC10.25□□□□□ -0.77
CUX1P39880 CASP5-209ENST00000531367 879 ntTSL 5 BASIC10.25□□□□□ -0.77
CUX1P39880 AC138811.1-201ENST00000569096 361 ntTSL 3 BASIC10.25□□□□□ -0.77
CUX1P39880 AC020916.2-201ENST00000591242 360 ntBASIC10.25□□□□□ -0.77
CUX1P39880 APOL4-212ENST00000616056 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
CUX1P39880 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
CUX1P39880 CSMD2-205ENST00000373381 13698 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
CUX1P39880 CPS1-212ENST00000619804 1542 ntTSL 5 BASIC10.25□□□□□ -0.77
CUX1P39880 LY75-201ENST00000263636 6886 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
CUX1P39880 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC10.25□□□□□ -0.77
CUX1P39880 ZHX3-218ENST00000560364 4283 ntTSL 5 BASIC10.25□□□□□ -0.77
CUX1P39880 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CUX1P39880 GTF2E1-201ENST00000283875 3012 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CUX1P39880 NPM1P4-201ENST00000414095 812 ntBASIC10.24□□□□□ -0.77
CUX1P39880 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC10.24□□□□□ -0.77
CUX1P39880 IGKV1OR10-1-201ENST00000442306 329 ntBASIC10.24□□□□□ -0.77
CUX1P39880 AL163193.1-201ENST00000444895 788 ntBASIC10.24□□□□□ -0.77
CUX1P39880 VN1R38P-201ENST00000450265 887 ntBASIC10.24□□□□□ -0.77
CUX1P39880 OR13C1P-201ENST00000457612 963 ntBASIC10.24□□□□□ -0.77
CUX1P39880 IGKV1OR22-5-201ENST00000458718 354 ntBASIC10.24□□□□□ -0.77
CUX1P39880 EIF3LP3-201ENST00000495197 822 ntBASIC10.24□□□□□ -0.77
CUX1P39880 DUTP7-201ENST00000507982 486 ntBASIC10.24□□□□□ -0.77
CUX1P39880 AC110056.1-201ENST00000525759 911 ntBASIC10.24□□□□□ -0.77
CUX1P39880 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC10.24□□□□□ -0.77
CUX1P39880 CU639417.4-201ENST00000623928 207 ntBASIC10.24□□□□□ -0.77
CUX1P39880 CCT5-215ENST00000625723 135 ntTSL 5 BASIC10.24□□□□□ -0.77
CUX1P39880 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CUX1P39880 AC092807.3-203ENST00000467530 2745 ntTSL 2 BASIC10.24□□□□□ -0.77
CUX1P39880 CTNNA1P1-201ENST00000515849 2728 ntBASIC10.24□□□□□ -0.77
CUX1P39880 EEF1A1P24-201ENST00000451469 1378 ntBASIC10.24□□□□□ -0.77
CUX1P39880 HDAC1P2-201ENST00000453661 1398 ntBASIC10.24□□□□□ -0.77
CUX1P39880 KLHL3-209ENST00000508657 6981 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CUX1P39880 RUNX1T1-248ENST00000613302 7687 ntAPPRIS P3 TSL 5 BASIC10.24□□□□□ -0.77
CUX1P39880 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
CUX1P39880 LINC01108-201ENST00000427276 3152 ntTSL 2 BASIC10.24□□□□□ -0.77
CUX1P39880 PGK2-201ENST00000304801 1657 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
CUX1P39880 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CUX1P39880 RNF146-210ENST00000608991 2169 ntAPPRIS P3 TSL 4 BASIC10.24□□□□□ -0.77
CUX1P39880 MID1-201ENST00000317552 6463 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CUX1P39880 UBAP2-201ENST00000360802 4284 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
CUX1P39880 NIPBL-201ENST00000282516 10435 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CUX1P39880 TMEM2-205ENST00000377066 5217 ntAPPRIS ALT1 TSL 1 (best) BASIC10.24□□□□□ -0.77
CUX1P39880 PARP14-202ENST00000474629 7915 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CUX1P39880 ZNF37A-201ENST00000351773 7027 ntAPPRIS P1 TSL 1 (best) BASIC10.23□□□□□ -0.77
CUX1P39880 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC10.23□□□□□ -0.77
CUX1P39880 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC10.23□□□□□ -0.77
CUX1P39880 LINC02250-201ENST00000422117 2491 ntTSL 1 (best) BASIC10.23□□□□□ -0.77
CUX1P39880 RPS27AP3-201ENST00000453803 454 ntBASIC10.23□□□□□ -0.77
CUX1P39880 IGLV3-30-201ENST00000524362 298 ntBASIC10.23□□□□□ -0.77
CUX1P39880 OR6M2P-201ENST00000529831 871 ntBASIC10.23□□□□□ -0.77
CUX1P39880 MIR1273E-201ENST00000581165 102 ntBASIC10.23□□□□□ -0.77
CUX1P39880 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC10.23□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms