Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC026348.1-201ENST00000462549 1053 ntBASIC10.29□□□□□ -0.76
CUX1P39880 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC10.29□□□□□ -0.76
CUX1P39880 RNA5SP34-201ENST00000516887 130 ntBASIC10.29□□□□□ -0.76
CUX1P39880 CYCSP22-201ENST00000517555 339 ntBASIC10.29□□□□□ -0.76
CUX1P39880 LINC02451-201ENST00000546982 565 ntTSL 4 BASIC10.29□□□□□ -0.76
CUX1P39880 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC10.29□□□□□ -0.76
CUX1P39880 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC10.29□□□□□ -0.76
CUX1P39880 AC139493.1-201ENST00000604368 397 ntBASIC10.29□□□□□ -0.76
CUX1P39880 AC022919.1-201ENST00000624979 626 ntBASIC10.29□□□□□ -0.76
CUX1P39880 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC10.29□□□□□ -0.76
CUX1P39880 ZNF385D-201ENST00000281523 10699 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
CUX1P39880 LMO7-207ENST00000465261 5580 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
CUX1P39880 FGD4-202ENST00000427716 8242 ntAPPRIS P1 TSL 2 BASIC10.29□□□□□ -0.76
CUX1P39880 ABCA4-201ENST00000370225 7309 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
CUX1P39880 CLASP1-203ENST00000409078 8002 ntAPPRIS P1 TSL 5 BASIC10.29□□□□□ -0.76
CUX1P39880 RUNX1T1-250ENST00000614812 7483 ntAPPRIS P3 TSL 5 BASIC10.29□□□□□ -0.76
CUX1P39880 LINC01602-201ENST00000522992 2109 ntTSL 1 (best) BASIC10.29□□□□□ -0.76
CUX1P39880 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC10.29□□□□□ -0.76
CUX1P39880 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC10.29□□□□□ -0.76
CUX1P39880 AC024587.1-201ENST00000505925 2157 ntBASIC10.29□□□□□ -0.76
CUX1P39880 DDX46-201ENST00000354283 3821 ntAPPRIS P1 TSL 1 (best) BASIC10.29□□□□□ -0.76
CUX1P39880 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC10.29□□□□□ -0.76
CUX1P39880 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC10.29□□□□□ -0.76
CUX1P39880 ADGRB3-203ENST00000546190 4569 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CUX1P39880 C1orf27-202ENST00000367470 3754 ntTSL 5 BASIC10.28□□□□□ -0.76
CUX1P39880 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
CUX1P39880 DPYD-202ENST00000370192 4412 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CUX1P39880 MFSD8-218ENST00000641186 4448 ntBASIC10.28□□□□□ -0.76
CUX1P39880 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CUX1P39880 RNA5SP46-201ENST00000362370 120 ntBASIC10.28□□□□□ -0.76
CUX1P39880 FAM66C-201ENST00000372173 678 ntTSL 5 BASIC10.28□□□□□ -0.76
CUX1P39880 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC10.28□□□□□ -0.76
CUX1P39880 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC10.28□□□□□ -0.76
CUX1P39880 RPS15AP30-201ENST00000420976 390 ntBASIC10.28□□□□□ -0.76
CUX1P39880 RPL34P3-201ENST00000421454 338 ntBASIC10.28□□□□□ -0.76
CUX1P39880 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC10.28□□□□□ -0.76
CUX1P39880 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC10.28□□□□□ -0.76
CUX1P39880 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC10.28□□□□□ -0.76
CUX1P39880 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC10.28□□□□□ -0.76
CUX1P39880 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC10.28□□□□□ -0.76
CUX1P39880 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC10.28□□□□□ -0.76
CUX1P39880 AC011451.1-201ENST00000591336 405 ntTSL 3 BASIC10.28□□□□□ -0.76
CUX1P39880 AL021918.2-201ENST00000613415 194 ntBASIC10.28□□□□□ -0.76
CUX1P39880 RPEL1-201ENST00000441178 2130 ntAPPRIS P1 BASIC10.28□□□□□ -0.76
CUX1P39880 SHPRH-203ENST00000367505 7201 ntAPPRIS P2 TSL 5 BASIC10.28□□□□□ -0.76
CUX1P39880 LAMB4-202ENST00000388781 5858 ntAPPRIS P1 TSL 1 (best) BASIC10.28□□□□□ -0.76
CUX1P39880 AL079307.1-201ENST00000553312 5982 ntTSL 1 (best) BASIC10.28□□□□□ -0.76
CUX1P39880 LRRC37B-202ENST00000341671 3025 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
CUX1P39880 PCDH19-201ENST00000255531 7937 ntAPPRIS P3 TSL 1 (best) BASIC10.28□□□□□ -0.76
CUX1P39880 SNW1-205ENST00000555761 1855 ntTSL 2 BASIC10.28□□□□□ -0.76
CUX1P39880 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC10.28□□□□□ -0.76
CUX1P39880 PSG7-201ENST00000406070 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC10.28□□□□□ -0.76
CUX1P39880 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC10.28□□□□□ -0.76
CUX1P39880 HMGB1P20-201ENST00000402555 677 ntBASIC10.28□□□□□ -0.76
CUX1P39880 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC10.28□□□□□ -0.76
CUX1P39880 YWHAEP1-201ENST00000453697 763 ntBASIC10.28□□□□□ -0.76
CUX1P39880 RN7SL466P-201ENST00000497546 295 ntBASIC10.28□□□□□ -0.76
CUX1P39880 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC10.28□□□□□ -0.76
CUX1P39880 MIR4700-201ENST00000578311 74 ntBASIC10.28□□□□□ -0.76
CUX1P39880 SLFN14-201ENST00000415846 2889 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
CUX1P39880 ANGPTL5-201ENST00000334289 2368 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
CUX1P39880 RNF217-AS1-201ENST00000439075 4507 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
CUX1P39880 KCNMA1-273ENST00000639913 12071 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.76
CUX1P39880 DST-207ENST00000421834 18030 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.76
CUX1P39880 UNC5D-201ENST00000287272 8662 ntTSL 5 BASIC10.27□□□□□ -0.76
CUX1P39880 RSAD2-201ENST00000382040 3519 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.76
CUX1P39880 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC10.27□□□□□ -0.76
CUX1P39880 UTP4-204ENST00000563094 4183 ntTSL 2 BASIC10.27□□□□□ -0.77
CUX1P39880 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
CUX1P39880 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
CUX1P39880 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
CUX1P39880 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
CUX1P39880 ITK-201ENST00000422843 4528 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
CUX1P39880 ADA2-201ENST00000262607 3925 ntAPPRIS P3 TSL 1 (best) BASIC10.27□□□□□ -0.77
CUX1P39880 AC053481.2-202ENST00000582394 1500 ntBASIC10.27□□□□□ -0.77
CUX1P39880 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC10.27□□□□□ -0.77
CUX1P39880 ACACB-203ENST00000377854 6588 ntTSL 5 BASIC10.27□□□□□ -0.77
CUX1P39880 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC10.27□□□□□ -0.77
CUX1P39880 MIR105-2-201ENST00000385083 81 ntBASIC10.27□□□□□ -0.77
CUX1P39880 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC10.27□□□□□ -0.77
CUX1P39880 NPM1P22-201ENST00000427761 952 ntBASIC10.27□□□□□ -0.77
CUX1P39880 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC10.27□□□□□ -0.77
CUX1P39880 CASP5-205ENST00000444749 1237 ntAPPRIS P1 TSL 2 BASIC10.27□□□□□ -0.77
CUX1P39880 YWHABP1-201ENST00000445359 727 ntBASIC10.27□□□□□ -0.77
CUX1P39880 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC10.27□□□□□ -0.77
CUX1P39880 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC10.27□□□□□ -0.77
CUX1P39880 HMGN2P36-201ENST00000529541 409 ntBASIC10.27□□□□□ -0.77
CUX1P39880 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC10.27□□□□□ -0.77
CUX1P39880 AC141002.1-201ENST00000607025 279 ntBASIC10.27□□□□□ -0.77
CUX1P39880 RN7SL544P-201ENST00000617232 284 ntBASIC10.27□□□□□ -0.77
CUX1P39880 ELSPBP1-206ENST00000619003 893 ntAPPRIS ALT2 TSL 5 BASIC10.27□□□□□ -0.77
CUX1P39880 RN7SL763P-201ENST00000620922 284 ntBASIC10.27□□□□□ -0.77
CUX1P39880 TSHZ2-205ENST00000626626 670 ntBASIC10.27□□□□□ -0.77
CUX1P39880 AL132640.3-201ENST00000630473 177 ntBASIC10.27□□□□□ -0.77
CUX1P39880 WDR75-207ENST00000631047 270 ntTSL 5 BASIC10.27□□□□□ -0.77
CUX1P39880 AL590004.4-201ENST00000566733 7060 ntBASIC10.27□□□□□ -0.77
CUX1P39880 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC10.27□□□□□ -0.77
CUX1P39880 RAB21-201ENST00000261263 15546 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
CUX1P39880 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
CUX1P39880 ZNF542P-202ENST00000467807 3209 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 77.8 ms