Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 RAB13-205ENST00000614713 1353 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 TRIM6-203ENST00000380107 2590 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 MAPK10-228ENST00000512689 2583 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 C4BPA-201ENST00000367070 2243 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
MSX1P28360 AC106869.1-203ENST00000419035 1892 ntTSL 2 BASIC7.58□□□□□ -1.2
MSX1P28360 MAPK10-248ENST00000640490 2715 ntTSL 5 BASIC7.58□□□□□ -1.2
MSX1P28360 KCNMA1-214ENST00000434208 4055 ntAPPRIS ALT2 TSL 5 BASIC7.57□□□□□ -1.2
MSX1P28360 ELAVL2-203ENST00000380117 2370 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
MSX1P28360 AC018682.1-201ENST00000506009 1519 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
MSX1P28360 SSBP2-212ENST00000509053 1534 ntTSL 2 BASIC7.57□□□□□ -1.2
MSX1P28360 CERS6-AS1-201ENST00000425636 2890 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
MSX1P28360 GM2A-201ENST00000357164 3896 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
MSX1P28360 RNF214-206ENST00000531452 2695 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
MSX1P28360 RAD21L1-203ENST00000409241 1808 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
MSX1P28360 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
MSX1P28360 MMADHC-202ENST00000422782 1462 ntTSL 5 BASIC7.57□□□□□ -1.2
MSX1P28360 AC127070.5-201ENST00000623177 2104 ntBASIC7.57□□□□□ -1.2
MSX1P28360 CFHR4-204ENST00000608469 1601 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
MSX1P28360 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC7.57□□□□□ -1.2
MSX1P28360 UBE2V1-223ENST00000617119 2432 ntTSL 4 BASIC7.57□□□□□ -1.2
MSX1P28360 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC7.57□□□□□ -1.2
MSX1P28360 CREM-212ENST00000374728 1933 ntTSL 5 BASIC7.57□□□□□ -1.2
MSX1P28360 PHF6-204ENST00000370803 4489 ntAPPRIS P2 TSL 1 (best) BASIC7.57□□□□□ -1.2
MSX1P28360 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
MSX1P28360 SMCO2-201ENST00000298876 1122 ntAPPRIS ALT2 TSL 5 BASIC7.57□□□□□ -1.2
MSX1P28360 KLRG1-202ENST00000356986 1206 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
MSX1P28360 RNU4-59P-201ENST00000364447 116 ntBASIC7.57□□□□□ -1.2
MSX1P28360 RNU6-707P-201ENST00000364647 95 ntBASIC7.57□□□□□ -1.2
MSX1P28360 LSM5-202ENST00000409292 538 ntTSL 2 BASIC7.57□□□□□ -1.2
MSX1P28360 SMCO2-202ENST00000416383 1272 ntAPPRIS P2 TSL 5 BASIC7.57□□□□□ -1.2
MSX1P28360 UBXN7-204ENST00000428095 1173 ntTSL 1 (best) BASIC7.57□□□□□ -1.2
MSX1P28360 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC7.57□□□□□ -1.2
MSX1P28360 CELF2-AS2-202ENST00000432370 1227 ntTSL 5 BASIC7.57□□□□□ -1.2
MSX1P28360 NDUFA5P4-201ENST00000436704 385 ntBASIC7.57□□□□□ -1.2
MSX1P28360 AL137789.1-201ENST00000439443 682 ntTSL 3 BASIC7.57□□□□□ -1.2
MSX1P28360 AC243962.1-201ENST00000441512 579 ntBASIC7.57□□□□□ -1.2
MSX1P28360 AL359711.1-201ENST00000441999 123 ntBASIC7.57□□□□□ -1.2
MSX1P28360 VNN3-210ENST00000450865 596 ntTSL 4 BASIC7.57□□□□□ -1.2
MSX1P28360 BZW1P1-201ENST00000454901 1240 ntBASIC7.57□□□□□ -1.2
MSX1P28360 EIF3LP2-201ENST00000457262 807 ntBASIC7.57□□□□□ -1.2
MSX1P28360 AC115223.1-201ENST00000466377 870 ntBASIC7.57□□□□□ -1.2
MSX1P28360 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC7.57□□□□□ -1.2
MSX1P28360 AC097173.1-201ENST00000505862 819 ntBASIC7.57□□□□□ -1.2
MSX1P28360 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC7.57□□□□□ -1.2
MSX1P28360 LINC02021-203ENST00000514145 569 ntTSL 4 BASIC7.57□□□□□ -1.2
MSX1P28360 AC110296.1-201ENST00000515680 341 ntTSL 3 BASIC7.57□□□□□ -1.2
MSX1P28360 RN7SKP190-201ENST00000516079 286 ntBASIC7.57□□□□□ -1.2
MSX1P28360 IGHV3-32-201ENST00000519182 355 ntBASIC7.57□□□□□ -1.2
MSX1P28360 IGHVII-78-1-201ENST00000521105 269 ntBASIC7.57□□□□□ -1.2
MSX1P28360 AP002453.2-201ENST00000533503 320 ntBASIC7.57□□□□□ -1.2
MSX1P28360 AL590560.1-203ENST00000544342 408 ntAPPRIS ALT2 TSL 2 BASIC7.57□□□□□ -1.2
MSX1P28360 AC117498.2-202ENST00000549864 473 ntTSL 2 BASIC7.57□□□□□ -1.2
MSX1P28360 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC7.57□□□□□ -1.2
MSX1P28360 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC7.57□□□□□ -1.2
MSX1P28360 SNHG19-201ENST00000563192 342 ntTSL 2 BASIC7.57□□□□□ -1.2
MSX1P28360 TUBAP4-201ENST00000569261 416 ntBASIC7.57□□□□□ -1.2
MSX1P28360 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC7.57□□□□□ -1.2
MSX1P28360 AC024267.3-201ENST00000579673 562 ntTSL 5 BASIC7.57□□□□□ -1.2
MSX1P28360 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC7.57□□□□□ -1.2
MSX1P28360 AC005323.1-203ENST00000585303 566 ntTSL 5 BASIC7.57□□□□□ -1.2
MSX1P28360 AC006557.4-201ENST00000585516 830 ntBASIC7.57□□□□□ -1.2
MSX1P28360 ZNF83-210ENST00000597161 509 ntTSL 4 BASIC7.57□□□□□ -1.2
MSX1P28360 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC7.57□□□□□ -1.2
MSX1P28360 Metazoa_SRP.46-201ENST00000611137 251 ntBASIC7.57□□□□□ -1.2
MSX1P28360 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC7.57□□□□□ -1.2
MSX1P28360 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC7.57□□□□□ -1.2
MSX1P28360 AC073488.5-201ENST00000631993 754 ntBASIC7.57□□□□□ -1.2
MSX1P28360 ZNF382-210ENST00000639288 834 ntTSL 5 BASIC7.57□□□□□ -1.2
MSX1P28360 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC7.57□□□□□ -1.2
MSX1P28360 AC138393.1-206ENST00000540997 1886 ntBASIC7.57□□□□□ -1.2
MSX1P28360 OR9Q1-201ENST00000335397 2488 ntAPPRIS P1 BASIC7.57□□□□□ -1.2
MSX1P28360 OR51E1-202ENST00000530215 2942 ntBASIC7.57□□□□□ -1.2
MSX1P28360 ABHD4-203ENST00000428304 3366 ntAPPRIS P1 TSL 1 (best) BASIC7.57□□□□□ -1.2
MSX1P28360 ZMYND8-201ENST00000262975 4139 ntAPPRIS ALT2 TSL 1 (best) BASIC7.57□□□□□ -1.2
MSX1P28360 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC7.57□□□□□ -1.2
MSX1P28360 AC010533.1-201ENST00000624875 2105 ntBASIC7.57□□□□□ -1.2
MSX1P28360 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC7.57□□□□□ -1.2
MSX1P28360 ZMYND8-206ENST00000372023 5144 ntAPPRIS ALT2 TSL 5 BASIC7.57□□□□□ -1.2
MSX1P28360 SLC11A2-203ENST00000394904 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 NECAP1-210ENST00000638237 2517 ntAPPRIS ALT1 TSL 5 BASIC7.56□□□□□ -1.2
MSX1P28360 EXOC7P1-201ENST00000509881 2059 ntBASIC7.56□□□□□ -1.2
MSX1P28360 IKZF5-201ENST00000368886 4555 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 SERPINA11-201ENST00000334708 1476 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 AC048380.2-201ENST00000624725 3548 ntBASIC7.56□□□□□ -1.2
MSX1P28360 SCMH1-210ENST00000402904 3204 ntTSL 5 BASIC7.56□□□□□ -1.2
MSX1P28360 TRIM55-204ENST00000353317 2624 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 TGIF1-223ENST00000618001 3030 ntTSL 2 BASIC7.56□□□□□ -1.2
MSX1P28360 CR1-203ENST00000367051 7469 ntTSL 5 BASIC7.56□□□□□ -1.2
MSX1P28360 CR1-204ENST00000367052 7469 ntTSL 5 BASIC7.56□□□□□ -1.2
MSX1P28360 CR1-205ENST00000367053 7469 ntTSL 5 BASIC7.56□□□□□ -1.2
MSX1P28360 Z93022.1-201ENST00000433228 1554 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 GP2-201ENST00000302555 3406 ntAPPRIS P3 TSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 AC073324.1-201ENST00000425993 1435 ntBASIC7.56□□□□□ -1.2
MSX1P28360 AC092111.2-201ENST00000611627 1414 ntBASIC7.56□□□□□ -1.2
MSX1P28360 MGAM-208ENST00000549489 6525 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 MIR135B-201ENST00000362189 97 ntBASIC7.56□□□□□ -1.2
MSX1P28360 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC7.56□□□□□ -1.2
MSX1P28360 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC7.56□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms