Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
HOXD4P09016 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
HOXD4P09016 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC5.99□□□□□ -1.45
HOXD4P09016 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC5.99□□□□□ -1.45
HOXD4P09016 MCFD2-206ENST00000409800 3955 ntTSL 4 BASIC5.99□□□□□ -1.45
HOXD4P09016 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
HOXD4P09016 OSBPL9-205ENST00000447887 2940 ntTSL 2 BASIC5.98□□□□□ -1.45
HOXD4P09016 TCF7L2-222ENST00000627217 3680 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
HOXD4P09016 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC5.98□□□□□ -1.45
HOXD4P09016 FTO-204ENST00000463855 3056 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
HOXD4P09016 DEUP1-209ENST00000531792 1656 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
HOXD4P09016 CLNK-204ENST00000515667 4180 ntAPPRIS ALT2 TSL 3 BASIC5.98□□□□□ -1.45
HOXD4P09016 GPR1-209ENST00000612892 2565 ntAPPRIS P1 TSL 4 BASIC5.98□□□□□ -1.45
HOXD4P09016 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
HOXD4P09016 VTRNA3-1P-201ENST00000362552 102 ntBASIC5.98□□□□□ -1.45
HOXD4P09016 RN7SKP237-201ENST00000364663 301 ntBASIC5.98□□□□□ -1.45
HOXD4P09016 SNORA70.3-201ENST00000365075 132 ntBASIC5.98□□□□□ -1.45
HOXD4P09016 TRAV1-2-201ENST00000390423 402 ntAPPRIS P1 BASIC5.98□□□□□ -1.45
HOXD4P09016 AC092642.1-201ENST00000392417 425 ntBASIC5.98□□□□□ -1.45
HOXD4P09016 AL391419.1-201ENST00000398901 1275 ntBASIC5.98□□□□□ -1.45
HOXD4P09016 PRELID1P1-201ENST00000403549 660 ntBASIC5.98□□□□□ -1.45
HOXD4P09016 LINC01497-201ENST00000420427 665 ntTSL 3 BASIC5.98□□□□□ -1.45
HOXD4P09016 CRYGGP-201ENST00000443337 145 ntBASIC5.98□□□□□ -1.45
HOXD4P09016 TNS3-209ENST00000458317 1156 ntTSL 5 BASIC5.98□□□□□ -1.45
HOXD4P09016 AC012158.1-202ENST00000482431 1132 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
HOXD4P09016 SCG5-207ENST00000497208 949 ntTSL 5 BASIC5.98□□□□□ -1.45
HOXD4P09016 AC093870.1-201ENST00000506837 213 ntBASIC5.98□□□□□ -1.45
HOXD4P09016 AC011352.2-201ENST00000514574 1016 ntBASIC5.98□□□□□ -1.45
HOXD4P09016 LDHBP3-201ENST00000514909 822 ntBASIC5.98□□□□□ -1.45
HOXD4P09016 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC5.98□□□□□ -1.45
HOXD4P09016 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.98□□□□□ -1.45
HOXD4P09016 AC024145.1-201ENST00000535324 775 ntTSL 3 BASIC5.98□□□□□ -1.45
HOXD4P09016 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.98□□□□□ -1.45
HOXD4P09016 AC105243.1-201ENST00000563172 1165 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
HOXD4P09016 AC004381.1-201ENST00000565498 351 ntTSL 5 BASIC5.98□□□□□ -1.45
HOXD4P09016 AC090227.1-201ENST00000590532 936 ntAPPRIS P1 TSL 5 BASIC5.98□□□□□ -1.45
HOXD4P09016 PCGEM1-202ENST00000606314 759 ntTSL 5 BASIC5.98□□□□□ -1.45
HOXD4P09016 MIR6071-201ENST00000616741 78 ntBASIC5.98□□□□□ -1.45
HOXD4P09016 AP001052.1-201ENST00000626421 99 ntBASIC5.98□□□□□ -1.45
HOXD4P09016 AC010325.3-201ENST00000641084 394 ntBASIC5.98□□□□□ -1.45
HOXD4P09016 C2CD6-203ENST00000439802 1639 ntAPPRIS ALT2 TSL 2 BASIC5.98□□□□□ -1.45
HOXD4P09016 NIN-204ENST00000382043 4216 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
HOXD4P09016 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
HOXD4P09016 AL355306.2-201ENST00000635570 1542 ntTSL 5 BASIC5.98□□□□□ -1.45
HOXD4P09016 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC5.98□□□□□ -1.45
HOXD4P09016 CX3CR1-202ENST00000399220 3106 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
HOXD4P09016 AC105114.1-201ENST00000624795 1862 ntBASIC5.98□□□□□ -1.45
HOXD4P09016 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
HOXD4P09016 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC5.98□□□□□ -1.45
HOXD4P09016 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC5.97□□□□□ -1.45
HOXD4P09016 LINC01613-201ENST00000561476 2780 ntBASIC5.97□□□□□ -1.45
HOXD4P09016 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC5.97□□□□□ -1.45
HOXD4P09016 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC5.97□□□□□ -1.45
HOXD4P09016 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
HOXD4P09016 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
HOXD4P09016 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.97□□□□□ -1.45
HOXD4P09016 ASNSP6-201ENST00000592770 1618 ntBASIC5.97□□□□□ -1.45
HOXD4P09016 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
HOXD4P09016 OR1A1-201ENST00000304094 930 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
HOXD4P09016 RPL12P13-201ENST00000310055 497 ntBASIC5.97□□□□□ -1.45
HOXD4P09016 PPIAP24-201ENST00000328558 471 ntBASIC5.97□□□□□ -1.45
HOXD4P09016 FAM183A-201ENST00000335282 488 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
HOXD4P09016 RNA5SP65-201ENST00000363166 119 ntBASIC5.97□□□□□ -1.45
HOXD4P09016 PKIB-203ENST00000368446 556 ntTSL 2 BASIC5.97□□□□□ -1.45
HOXD4P09016 S100A1-202ENST00000368696 522 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
HOXD4P09016 FAM183A-205ENST00000410048 500 ntTSL 3 BASIC5.97□□□□□ -1.45
HOXD4P09016 RNA5SP251-201ENST00000410614 137 ntBASIC5.97□□□□□ -1.45
HOXD4P09016 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
HOXD4P09016 MRPS21P5-201ENST00000417885 231 ntBASIC5.97□□□□□ -1.45
HOXD4P09016 AC233728.1-201ENST00000418049 218 ntTSL 5 BASIC5.97□□□□□ -1.45
HOXD4P09016 VN1R3-201ENST00000418822 919 ntBASIC5.97□□□□□ -1.45
HOXD4P09016 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC5.97□□□□□ -1.45
HOXD4P09016 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
HOXD4P09016 AC069277.1-205ENST00000432743 630 ntTSL 5 BASIC5.97□□□□□ -1.45
HOXD4P09016 AL731544.1-201ENST00000436500 370 ntTSL 5 BASIC5.97□□□□□ -1.45
HOXD4P09016 AL590399.4-201ENST00000436561 601 ntBASIC5.97□□□□□ -1.45
HOXD4P09016 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC5.97□□□□□ -1.45
HOXD4P09016 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC5.97□□□□□ -1.45
HOXD4P09016 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC5.97□□□□□ -1.45
HOXD4P09016 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC5.97□□□□□ -1.45
HOXD4P09016 AC245088.1-201ENST00000486508 384 ntTSL 3 BASIC5.97□□□□□ -1.45
HOXD4P09016 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC5.97□□□□□ -1.45
HOXD4P09016 ANP32E-205ENST00000533654 908 ntTSL 2 BASIC5.97□□□□□ -1.45
HOXD4P09016 AC016144.1-201ENST00000548175 1087 ntBASIC5.97□□□□□ -1.45
HOXD4P09016 AL591767.3-201ENST00000554632 525 ntBASIC5.97□□□□□ -1.45
HOXD4P09016 AL355838.1-201ENST00000554814 559 ntTSL 4 BASIC5.97□□□□□ -1.45
HOXD4P09016 HNRNPCP1-201ENST00000556181 766 ntBASIC5.97□□□□□ -1.45
HOXD4P09016 AC090527.1-201ENST00000557965 431 ntTSL 3 BASIC5.97□□□□□ -1.45
HOXD4P09016 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC5.97□□□□□ -1.45
HOXD4P09016 AC092718.4-201ENST00000566639 716 ntBASIC5.97□□□□□ -1.45
HOXD4P09016 AC106785.4-201ENST00000569492 412 ntBASIC5.97□□□□□ -1.45
HOXD4P09016 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC5.97□□□□□ -1.45
HOXD4P09016 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC5.97□□□□□ -1.45
HOXD4P09016 AC011921.2-201ENST00000589465 152 ntBASIC5.97□□□□□ -1.45
HOXD4P09016 ZNF235-204ENST00000589799 955 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
HOXD4P09016 AC079315.1-201ENST00000602952 623 ntBASIC5.97□□□□□ -1.45
HOXD4P09016 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC5.97□□□□□ -1.45
HOXD4P09016 AP001153.1-201ENST00000641024 338 ntBASIC5.97□□□□□ -1.45
HOXD4P09016 ZNF92-201ENST00000328747 3210 ntAPPRIS P3 TSL 1 (best) BASIC5.97□□□□□ -1.45
HOXD4P09016 TNFSF11-202ENST00000358545 1520 ntTSL 1 (best) BASIC5.97□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 95.1 ms