Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 RPL7P40-201ENST00000481703 745 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 CREM-236ENST00000487763 429 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 GLYCTK-AS1-203ENST00000493616 445 ntTSL 3 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AC010406.1-201ENST00000507948 555 ntTSL 3 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AC092593.2-201ENST00000513866 913 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 VPS37A-208ENST00000521005 479 ntTSL 3 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AC087257.2-201ENST00000538759 928 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 MTCYBP27-201ENST00000555160 670 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AC106028.2-201ENST00000555325 464 ntTSL 4 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AC087477.5-202ENST00000560242 389 ntTSL 3 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 RN7SL42P-201ENST00000579786 294 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AC008088.1-201ENST00000580993 280 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AC016493.1-201ENST00000586106 688 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AC010503.3-201ENST00000594355 540 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AL139344.1-201ENST00000605228 195 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AC023206.1-201ENST00000605824 298 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AL589740.1-208ENST00000606913 812 ntTSL 5 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AL139123.1-201ENST00000612008 430 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 pRNA.12-201ENST00000614353 90 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 pRNA.3-201ENST00000615048 90 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 CCL23-203ENST00000615050 624 ntAPPRIS P3 TSL 1 (best) BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 LINC01742-201ENST00000616333 628 ntTSL 3 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 NPPA-AS1_1.1-201ENST00000622391 173 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 AC129908.1-201ENST00000624553 648 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 METAP1-212ENST00000625963 147 ntTSL 5 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 CCNT2-202ENST00000295238 4491 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 ZNF573-201ENST00000339503 2014 ntTSL 5 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 RNF41-212ENST00000615206 5216 ntAPPRIS P1 TSL 5 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 GABRB3-225ENST00000638099 2752 ntTSL 5 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 MORF4L2-208ENST00000441076 1828 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 YOD1-202ENST00000367084 6291 ntTSL 2 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 CDH18-201ENST00000274170 2809 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 TMEM138-209ENST00000542946 2839 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 ZNF544-206ENST00000596652 2818 ntAPPRIS P3 TSL 1 (best) BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 ZNF544-217ENST00000600220 2837 ntAPPRIS ALT2 TSL 3 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 KLHL32-207ENST00000620278 2642 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 KYNUP1-201ENST00000466683 1406 ntBASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 UGP2-203ENST00000445915 1955 ntTSL 2 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 CLASP2-225ENST00000635664 4176 ntTSL 5 BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 RIF1-206ENST00000453091 8053 ntAPPRIS ALT2 TSL 1 (best) BASIC8.28□□□□□ -1.08
TRAIPQ9BWF2 SAP18-207ENST00000607003 2234 ntAPPRIS ALT1 TSL 1 (best) BASIC8.27□□□□□ -1.08
TRAIPQ9BWF2 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.08
TRAIPQ9BWF2 CYFIP2-210ENST00000522463 3477 ntTSL 2 BASIC8.27□□□□□ -1.08
TRAIPQ9BWF2 ATP1A4-201ENST00000368081 3839 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 GPR63-201ENST00000229955 5952 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AC005261.4-201ENST00000600047 1385 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 GPI-202ENST00000415930 4000 ntTSL 2 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AC007993.1-201ENST00000621298 2430 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 RNU6-543P-201ENST00000362576 108 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 RNU6-1339P-201ENST00000363574 91 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 RNU6-1214P-201ENST00000363650 109 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 RNA5SP302-201ENST00000364896 100 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 ECHDC1-202ENST00000368289 909 ntTSL 5 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 MIR431-201ENST00000385266 114 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 HMGB3P7-201ENST00000400214 611 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 NUS1P4-201ENST00000401550 585 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 EPGN-202ENST00000413830 1196 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 PPIAP30-201ENST00000415473 519 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AC023141.10-201ENST00000415634 200 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AC092042.2-201ENST00000417304 331 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AL109924.2-201ENST00000419800 934 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 MFSD13B-201ENST00000420133 1290 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AC105052.2-201ENST00000434317 794 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 RPS19P6-201ENST00000441327 433 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AC106869.1-202ENST00000441997 604 ntTSL 4 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AC007327.1-201ENST00000447461 264 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AL157400.2-201ENST00000454174 563 ntTSL 2 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 RANP1-206ENST00000455094 651 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AL359915.2-203ENST00000457043 540 ntTSL 3 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 USP9YP25-201ENST00000457708 443 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AC110749.1-201ENST00000462007 357 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 PRICKLE2-AS2-201ENST00000484703 496 ntTSL 3 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AC091951.3-201ENST00000504093 246 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 LINC02198-201ENST00000504280 810 ntTSL 3 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AC090592.1-202ENST00000533049 568 ntTSL 4 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 PTER-205ENST00000535784 1203 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 KDM1B-203ENST00000546309 496 ntTSL 1 (best) BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AP001269.3-201ENST00000588718 329 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 MTND3P19-201ENST00000603825 345 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 DPRXP5-201ENST00000604662 539 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AC139795.3-201ENST00000606358 541 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AL355306.2-208ENST00000634868 1251 ntTSL 5 BASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 AP003399.1-201ENST00000637534 361 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 OR7A1P-202ENST00000641542 1158 ntBASIC8.27□□□□□ -1.09
TRAIPQ9BWF2 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC8.27□□□□□ -1.09
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms