Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
USP39Q53GS9 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
USP39Q53GS9 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC6.95□□□□□ -1.3
USP39Q53GS9 AC132219.2-201ENST00000624416 2327 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 GRIK1-202ENST00000389124 2712 ntTSL 5 BASIC6.95□□□□□ -1.3
USP39Q53GS9 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
USP39Q53GS9 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
USP39Q53GS9 OFD1P10Y-201ENST00000434110 1433 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC6.95□□□□□ -1.3
USP39Q53GS9 DCAF13-210ENST00000618975 2038 ntTSL 2 BASIC6.95□□□□□ -1.3
USP39Q53GS9 ODF2L-202ENST00000317336 4376 ntTSL 5 BASIC6.95□□□□□ -1.3
USP39Q53GS9 RNA5SP85-201ENST00000365378 119 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 MIR323B-201ENST00000385269 82 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC6.95□□□□□ -1.3
USP39Q53GS9 AL353651.1-201ENST00000415629 355 ntTSL 5 BASIC6.95□□□□□ -1.3
USP39Q53GS9 AL357078.2-201ENST00000416486 427 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 VN1R3-201ENST00000418822 919 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
USP39Q53GS9 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC6.95□□□□□ -1.3
USP39Q53GS9 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC6.95□□□□□ -1.3
USP39Q53GS9 USP9YP28-201ENST00000435142 589 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC6.95□□□□□ -1.3
USP39Q53GS9 IGKV1OR10-1-201ENST00000442306 329 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 Z77249.1-201ENST00000444622 1175 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 GAPDHP16-201ENST00000448152 962 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 IGKV1OR22-5-201ENST00000458718 354 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 OR7E22P-201ENST00000478335 1035 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 RN7SL88P-201ENST00000480166 299 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 PFN1P8-201ENST00000497012 543 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 AC093772.1-201ENST00000513519 506 ntTSL 2 BASIC6.95□□□□□ -1.3
USP39Q53GS9 AC117525.1-201ENST00000515228 503 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC6.95□□□□□ -1.3
USP39Q53GS9 MTND2P32-201ENST00000521584 1038 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 AC025437.3-201ENST00000523178 771 ntTSL 5 BASIC6.95□□□□□ -1.3
USP39Q53GS9 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC6.95□□□□□ -1.3
USP39Q53GS9 SETP17-201ENST00000534163 817 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 LRRC34P1-201ENST00000542742 915 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC6.95□□□□□ -1.3
USP39Q53GS9 MRPS21P9-201ENST00000571150 257 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 AC211486.2-201ENST00000576046 280 ntTSL 3 BASIC6.95□□□□□ -1.3
USP39Q53GS9 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC6.95□□□□□ -1.3
USP39Q53GS9 AC009303.3-201ENST00000591103 736 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 AC007255.2-201ENST00000604053 631 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 AC012368.3-201ENST00000604190 219 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 AC011891.2-201ENST00000604949 397 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 AC012557.2-201ENST00000605919 418 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 AC135803.1-201ENST00000608748 565 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 AC068726.1-201ENST00000610993 341 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 CR589904.2-201ENST00000612533 440 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 AC012676.3-201ENST00000614983 479 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 AC089999.3-201ENST00000622440 577 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 AC073592.6-201ENST00000624271 415 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 PCBP1-AS1-359ENST00000630283 1063 ntTSL 5 BASIC6.95□□□□□ -1.3
USP39Q53GS9 PBRM1-202ENST00000337303 4825 ntAPPRIS ALT1 TSL 1 (best) BASIC6.95□□□□□ -1.3
USP39Q53GS9 ARPP21-220ENST00000441454 2880 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
USP39Q53GS9 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC6.95□□□□□ -1.3
USP39Q53GS9 INPP4B-212ENST00000507861 1506 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
USP39Q53GS9 DLEU2L-201ENST00000371086 3555 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 SFTPD-AS1-201ENST00000608229 5001 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 SORBS1-203ENST00000354106 3015 ntAPPRIS ALT2 TSL 5 BASIC6.95□□□□□ -1.3
USP39Q53GS9 ENO1P4-201ENST00000416471 1785 ntBASIC6.95□□□□□ -1.3
USP39Q53GS9 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
USP39Q53GS9 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
USP39Q53GS9 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
USP39Q53GS9 HMGCR-209ENST00000511206 3395 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
USP39Q53GS9 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC6.94□□□□□ -1.3
USP39Q53GS9 HP1BP3-203ENST00000375003 4822 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
USP39Q53GS9 NRCAM-201ENST00000351718 6228 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
USP39Q53GS9 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC6.94□□□□□ -1.3
USP39Q53GS9 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC6.94□□□□□ -1.3
USP39Q53GS9 GPATCH2-202ENST00000366935 5851 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
USP39Q53GS9 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC6.94□□□□□ -1.3
USP39Q53GS9 DEFB121-202ENST00000376314 389 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
USP39Q53GS9 NUDT5-203ENST00000378940 1126 ntTSL 5 BASIC6.94□□□□□ -1.3
USP39Q53GS9 ADPRM-201ENST00000379774 1209 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
USP39Q53GS9 MT-RNR1-201ENST00000389680 954 ntBASIC6.94□□□□□ -1.3
USP39Q53GS9 RN7SKP232-201ENST00000410170 290 ntBASIC6.94□□□□□ -1.3
USP39Q53GS9 AL773545.3-201ENST00000414297 706 ntBASIC6.94□□□□□ -1.3
USP39Q53GS9 LINC00462-201ENST00000425350 962 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
USP39Q53GS9 CYP4F32P-201ENST00000426492 504 ntBASIC6.94□□□□□ -1.3
USP39Q53GS9 FAR1P1-201ENST00000427163 934 ntBASIC6.94□□□□□ -1.3
USP39Q53GS9 OSTN-AS1-201ENST00000430375 515 ntTSL 5 BASIC6.94□□□□□ -1.3
USP39Q53GS9 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC6.94□□□□□ -1.3
USP39Q53GS9 VN1R110P-201ENST00000438988 971 ntBASIC6.94□□□□□ -1.3
USP39Q53GS9 GAPDHP37-201ENST00000442317 968 ntBASIC6.94□□□□□ -1.3
USP39Q53GS9 AC092647.3-201ENST00000443044 633 ntBASIC6.94□□□□□ -1.3
USP39Q53GS9 GAPDHP20-201ENST00000444107 1007 ntBASIC6.94□□□□□ -1.3
USP39Q53GS9 RPS15AP29-201ENST00000445539 400 ntBASIC6.94□□□□□ -1.3
USP39Q53GS9 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC6.94□□□□□ -1.3
USP39Q53GS9 CCNJP2-201ENST00000457810 1163 ntBASIC6.94□□□□□ -1.3
USP39Q53GS9 AC073842.2-201ENST00000494221 572 ntTSL 4 BASIC6.94□□□□□ -1.3
USP39Q53GS9 AC069439.2-201ENST00000496403 789 ntTSL 2 BASIC6.94□□□□□ -1.3
USP39Q53GS9 PABPC1P1-201ENST00000506347 591 ntBASIC6.94□□□□□ -1.3
USP39Q53GS9 AC008691.1-202ENST00000521472 811 ntTSL 3 BASIC6.94□□□□□ -1.3
USP39Q53GS9 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC6.94□□□□□ -1.3
USP39Q53GS9 AP004607.6-201ENST00000525033 1202 ntBASIC6.94□□□□□ -1.3
USP39Q53GS9 CRYAB-207ENST00000527950 887 ntAPPRIS P1 TSL 5 BASIC6.94□□□□□ -1.3
USP39Q53GS9 AC027288.1-201ENST00000548359 816 ntTSL 3 BASIC6.94□□□□□ -1.3
USP39Q53GS9 PSMA6-204ENST00000553809 879 ntAPPRIS ALT1 TSL 3 BASIC6.94□□□□□ -1.3
USP39Q53GS9 AC037479.1-201ENST00000558361 625 ntBASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 264.8 ms