Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 RPS27P20-201ENST00000492051 246 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC110011.1-201ENST00000518260 582 ntTSL 3 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AP000620.1-201ENST00000527147 504 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 GOLGA6L5P-203ENST00000559768 578 ntTSL 4 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC092332.1-201ENST00000563684 829 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC068768.2-201ENST00000602352 343 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AL035422.2-201ENST00000603059 565 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 FBXO43-201ENST00000428847 2886 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 TMEM170B-201ENST00000379426 8362 ntAPPRIS P1 TSL 4 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 CATSPER2-202ENST00000381761 1758 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 PSMC1P4-201ENST00000515236 1327 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 ZNF677-206ENST00000598513 3497 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 SOX6-202ENST00000396356 8865 ntAPPRIS P3 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 NRXN3-201ENST00000281127 8504 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AL354890.1-201ENST00000413730 346 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 RPL12P12-201ENST00000424633 501 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC094019.1-201ENST00000434678 472 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AL161636.2-201ENST00000445179 927 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 COX4I1P2-201ENST00000447446 547 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AL359839.1-201ENST00000451975 1160 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 NDUFA5P5-201ENST00000468361 342 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC022206.1-201ENST00000495947 347 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC016642.1-202ENST00000509476 641 ntTSL 3 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC092652.2-201ENST00000552220 622 ntTSL 4 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 ULK4P1-202ENST00000565174 503 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC133552.4-201ENST00000576103 676 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 MIR4700-201ENST00000578311 74 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 PRSS3P3-201ENST00000612253 692 ntTSL 5 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AL109924.4-201ENST00000623089 670 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 DYNC2LI1-201ENST00000260605 1399 ntAPPRIS P3 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 NRG3-208ENST00000556918 1581 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 LINC00922-203ENST00000569736 1760 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 DNAJC15-201ENST00000379221 7853 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 LCA5L-218ENST00000485895 2551 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 SYNPO2-202ENST00000429713 9920 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 TMC3-AS1-206ENST00000612811 2726 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC108676.1-201ENST00000455557 2969 ntTSL 2 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC011346.1-201ENST00000638059 1359 ntAPPRIS ALT2 TSL 5 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 PLAC1-201ENST00000359237 1131 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 C1orf194-204ENST00000369949 731 ntTSL 2 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 LINC00222-203ENST00000416890 602 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AL669831.5-205ENST00000429505 441 ntTSL 3 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 NFIA-AS2-203ENST00000438559 1275 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 RN7SL273P-201ENST00000481561 299 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 RPL19P11-201ENST00000495944 589 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC139713.2-204ENST00000511042 342 ntTSL 5 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC079866.1-201ENST00000534985 1220 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC027544.3-201ENST00000535082 757 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 SNX18P12-201ENST00000624821 759 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 C16orf62-202ENST00000417362 3115 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 LINC01903-201ENST00000580659 2149 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 TRAM2-201ENST00000182527 6908 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 SNORA68-201ENST00000384437 133 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 RN7SKP206-201ENST00000410823 293 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 DNAJA1P5-201ENST00000440278 943 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 OR2L9P-201ENST00000444456 913 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 KRTAP2-5P-201ENST00000446109 396 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 RPS4XP23-201ENST00000487801 237 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC021220.1-201ENST00000507445 630 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 RNA5SP287-201ENST00000516358 103 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC087855.2-201ENST00000518217 537 ntTSL 3 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 TPRX1P1-201ENST00000557620 319 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC091167.5-201ENST00000605689 894 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC004801.6-201ENST00000616571 978 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC018717.1-201ENST00000457712 1505 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 WNT2B-203ENST00000369686 10879 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 SLC7A6-216ENST00000618043 6124 ntTSL 5 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AC129502.1-201ENST00000623261 1654 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 LCP2-206ENST00000521416 1599 ntTSL 2 BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 RRH-201ENST00000317735 1455 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 EEF1A1P9-201ENST00000514975 1383 ntBASIC1.98□□□□□ -2.09
SYNE1Q8NF91 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 TSLP-201ENST00000344895 736 ntAPPRIS P2 TSL 1 (best) BASIC1.98□□□□□ -2.09
SYNE1Q8NF91 RNA5SP172-201ENST00000365061 118 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 174.5 ms