Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC021820.1-201ENST00000525564 808 ntBASIC5.49□□□□□ -1.53
CDX1P47902 PCED1B-AS1-202ENST00000547600 523 ntTSL 3 BASIC5.49□□□□□ -1.53
CDX1P47902 AL135978.1-201ENST00000553618 1266 ntBASIC5.49□□□□□ -1.53
CDX1P47902 AL358292.1-201ENST00000554181 412 ntTSL 2 BASIC5.49□□□□□ -1.53
CDX1P47902 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC5.49□□□□□ -1.53
CDX1P47902 AL133297.1-201ENST00000568149 404 ntTSL 2 BASIC5.49□□□□□ -1.53
CDX1P47902 LINC01919-203ENST00000581198 598 ntTSL 3 BASIC5.49□□□□□ -1.53
CDX1P47902 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC5.49□□□□□ -1.53
CDX1P47902 AC098847.2-201ENST00000588088 528 ntTSL 5 BASIC5.49□□□□□ -1.53
CDX1P47902 AC100814.1-201ENST00000606963 623 ntBASIC5.49□□□□□ -1.53
CDX1P47902 AC007671.1-201ENST00000616957 830 ntBASIC5.49□□□□□ -1.53
CDX1P47902 PPP3CB-AS1-215ENST00000620559 656 ntTSL 5 BASIC5.49□□□□□ -1.53
CDX1P47902 LINC00466-206ENST00000634576 1279 ntTSL 5 BASIC5.49□□□□□ -1.53
CDX1P47902 LINC01108-202ENST00000635227 776 ntTSL 3 BASIC5.49□□□□□ -1.53
CDX1P47902 AL139254.2-202ENST00000641937 1156 ntBASIC5.49□□□□□ -1.53
CDX1P47902 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC5.49□□□□□ -1.53
CDX1P47902 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CDX1P47902 ARF4-209ENST00000496292 1467 ntTSL 5 BASIC5.49□□□□□ -1.53
CDX1P47902 NAMPTP1-201ENST00000440465 2514 ntBASIC5.49□□□□□ -1.53
CDX1P47902 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CDX1P47902 AHNAK2-201ENST00000333244 18254 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
CDX1P47902 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC5.49□□□□□ -1.53
CDX1P47902 AC126474.2-201ENST00000623268 1750 ntBASIC5.49□□□□□ -1.53
CDX1P47902 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CDX1P47902 ZPLD1-201ENST00000306176 3619 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
CDX1P47902 ZNF816-203ENST00000357666 2697 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
CDX1P47902 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC5.49□□□□□ -1.53
CDX1P47902 SSXP3-201ENST00000442971 1300 ntBASIC5.48□□□□□ -1.53
CDX1P47902 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC5.48□□□□□ -1.53
CDX1P47902 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 INPP4B-212ENST00000507861 1506 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 CASP10-208ENST00000448480 1603 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 AP002370.1-201ENST00000528055 1602 ntBASIC5.48□□□□□ -1.53
CDX1P47902 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.48□□□□□ -1.53
CDX1P47902 AC090771.1-201ENST00000585803 1618 ntBASIC5.48□□□□□ -1.53
CDX1P47902 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC5.48□□□□□ -1.53
CDX1P47902 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 LTA4H-209ENST00000552789 2025 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 TRAPPC3L-201ENST00000356128 2421 ntTSL 2 BASIC5.48□□□□□ -1.53
CDX1P47902 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.48□□□□□ -1.53
CDX1P47902 CENPJ-201ENST00000381884 4347 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
CDX1P47902 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 CASC15-201ENST00000444265 1497 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 RNU6-697P-201ENST00000363348 107 ntBASIC5.48□□□□□ -1.53
CDX1P47902 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 U3.23-201ENST00000391132 200 ntBASIC5.48□□□□□ -1.53
CDX1P47902 RAB5CP1-201ENST00000395972 580 ntBASIC5.48□□□□□ -1.53
CDX1P47902 AL359715.1-201ENST00000404330 555 ntBASIC5.48□□□□□ -1.53
CDX1P47902 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC5.48□□□□□ -1.53
CDX1P47902 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC5.48□□□□□ -1.53
CDX1P47902 CHCHD3P1-201ENST00000425516 676 ntBASIC5.48□□□□□ -1.53
CDX1P47902 AL139042.1-201ENST00000429137 305 ntTSL 3 BASIC5.48□□□□□ -1.53
CDX1P47902 BX679664.2-201ENST00000439282 283 ntBASIC5.48□□□□□ -1.53
CDX1P47902 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC5.48□□□□□ -1.53
CDX1P47902 PRDX1P1-201ENST00000449329 596 ntBASIC5.48□□□□□ -1.53
CDX1P47902 AC009244.1-201ENST00000450566 258 ntBASIC5.48□□□□□ -1.53
CDX1P47902 MED28P7-201ENST00000456611 530 ntBASIC5.48□□□□□ -1.53
CDX1P47902 CTSLP6-201ENST00000458273 1002 ntBASIC5.48□□□□□ -1.53
CDX1P47902 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC5.48□□□□□ -1.53
CDX1P47902 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5.48□□□□□ -1.53
CDX1P47902 RN7SL88P-201ENST00000480166 299 ntBASIC5.48□□□□□ -1.53
CDX1P47902 AC005017.1-201ENST00000482002 490 ntBASIC5.48□□□□□ -1.53
CDX1P47902 AC092436.4-201ENST00000510905 483 ntTSL 3 BASIC5.48□□□□□ -1.53
CDX1P47902 RNA5SP96-201ENST00000516041 107 ntBASIC5.48□□□□□ -1.53
CDX1P47902 AP000426.1-201ENST00000518749 361 ntTSL 3 BASIC5.48□□□□□ -1.53
CDX1P47902 SSU72P6-201ENST00000532644 488 ntBASIC5.48□□□□□ -1.53
CDX1P47902 ETFBKMT-204ENST00000538391 1067 ntTSL 3 BASIC5.48□□□□□ -1.53
CDX1P47902 MEG8-217ENST00000556637 924 ntTSL 5 BASIC5.48□□□□□ -1.53
CDX1P47902 AL359232.1-202ENST00000556874 1206 ntTSL 2 BASIC5.48□□□□□ -1.53
CDX1P47902 AC116158.2-201ENST00000559544 553 ntTSL 4 BASIC5.48□□□□□ -1.53
CDX1P47902 AC009268.1-201ENST00000561352 1203 ntBASIC5.48□□□□□ -1.53
CDX1P47902 RPS27AP19-201ENST00000597285 458 ntBASIC5.48□□□□□ -1.53
CDX1P47902 AC022001.1-201ENST00000605193 268 ntBASIC5.48□□□□□ -1.53
CDX1P47902 AC104184.1-201ENST00000607513 721 ntBASIC5.48□□□□□ -1.53
CDX1P47902 RNU6-84P-201ENST00000607737 102 ntBASIC5.48□□□□□ -1.53
CDX1P47902 AC063962.1-201ENST00000608199 521 ntBASIC5.48□□□□□ -1.53
CDX1P47902 LRMDA-216ENST00000611306 393 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
CDX1P47902 RN7SL126P-201ENST00000616400 299 ntBASIC5.48□□□□□ -1.53
CDX1P47902 AL590410.1-201ENST00000617925 333 ntBASIC5.48□□□□□ -1.53
CDX1P47902 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC5.48□□□□□ -1.53
CDX1P47902 LARP1B-203ENST00000432347 2707 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
CDX1P47902 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
CDX1P47902 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
CDX1P47902 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
CDX1P47902 DMD-228ENST00000541735 7080 ntTSL 5 BASIC5.48□□□□□ -1.53
CDX1P47902 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC5.48□□□□□ -1.53
CDX1P47902 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC5.48□□□□□ -1.53
CDX1P47902 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 FANCD2-205ENST00000431693 2450 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CDX1P47902 AL365204.1-201ENST00000423440 1430 ntTSL 5 BASIC5.48□□□□□ -1.53
CDX1P47902 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.48□□□□□ -1.53
CDX1P47902 TRIM75P-201ENST00000503032 1407 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms