Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC011352.2-201ENST00000514574 1016 ntBASIC6.57□□□□□ -1.36
MSX2P35548 AC103974.1-201ENST00000527285 874 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX2P35548 AC024145.1-201ENST00000535324 775 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX2P35548 PFDN5-214ENST00000551018 847 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 LINC02301-201ENST00000553760 773 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX2P35548 AL132719.1-201ENST00000554515 423 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX2P35548 OR4U1P-201ENST00000554958 912 ntBASIC6.57□□□□□ -1.36
MSX2P35548 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC6.57□□□□□ -1.36
MSX2P35548 ACTG1P15-201ENST00000570019 1063 ntBASIC6.57□□□□□ -1.36
MSX2P35548 AC006441.4-202ENST00000577621 510 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX2P35548 AC087499.3-201ENST00000578210 717 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX2P35548 AC090666.1-201ENST00000578241 445 ntBASIC6.57□□□□□ -1.36
MSX2P35548 RPL35AP25-201ENST00000584631 330 ntBASIC6.57□□□□□ -1.36
MSX2P35548 AL121985.1-203ENST00000588034 556 ntTSL 4 BASIC6.57□□□□□ -1.36
MSX2P35548 AC107993.1-201ENST00000591343 684 ntBASIC6.57□□□□□ -1.36
MSX2P35548 AL023806.2-201ENST00000603042 263 ntBASIC6.57□□□□□ -1.36
MSX2P35548 AL050403.2-202ENST00000603462 492 ntTSL 5 BASIC6.57□□□□□ -1.36
MSX2P35548 AC019080.4-201ENST00000606200 564 ntTSL 5 BASIC6.57□□□□□ -1.36
MSX2P35548 AC112503.1-201ENST00000608436 391 ntBASIC6.57□□□□□ -1.36
MSX2P35548 LINC01742-201ENST00000616333 628 ntTSL 3 BASIC6.57□□□□□ -1.36
MSX2P35548 SPINK6-203ENST00000621437 605 ntAPPRIS P1 TSL 3 BASIC6.57□□□□□ -1.36
MSX2P35548 DTHD1-206ENST00000639862 3819 ntTSL 5 BASIC6.57□□□□□ -1.36
MSX2P35548 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
MSX2P35548 OR5AC4P-202ENST00000642086 985 ntBASIC6.57□□□□□ -1.36
MSX2P35548 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 SLC22A25-201ENST00000306494 1692 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
MSX2P35548 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 RABGEF1-202ENST00000380828 3864 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX2P35548 FBXO3-209ENST00000531080 1448 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX2P35548 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC6.57□□□□□ -1.36
MSX2P35548 FAM240A-201ENST00000444264 1826 ntAPPRIS P2 TSL 2 BASIC6.57□□□□□ -1.36
MSX2P35548 FAM240A-202ENST00000640551 1826 ntAPPRIS ALT2 TSL 2 BASIC6.57□□□□□ -1.36
MSX2P35548 AGXT2-201ENST00000231420 2364 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 ADAMTS9-AS2-203ENST00000481312 1970 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 FBXW12-204ENST00000445170 1379 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
MSX2P35548 PPIL1-201ENST00000373699 1739 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 ERC2-214ENST00000612797 3831 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 API5P1-201ENST00000424316 1510 ntBASIC6.56□□□□□ -1.36
MSX2P35548 LINC01606-203ENST00000519160 2292 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 TRAF5-201ENST00000261464 3972 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 AC245100.4-202ENST00000634638 1342 ntTSL 5 BASIC6.56□□□□□ -1.36
MSX2P35548 TRIM38-201ENST00000357085 9413 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 NBPF11-204ENST00000614785 4343 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
MSX2P35548 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC6.56□□□□□ -1.36
MSX2P35548 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 AL662795.2-201ENST00000624252 3706 ntBASIC6.56□□□□□ -1.36
MSX2P35548 LINC02511-201ENST00000505736 1668 ntTSL 5 BASIC6.56□□□□□ -1.36
MSX2P35548 CASC11-201ENST00000502463 3301 ntTSL 2 BASIC6.56□□□□□ -1.36
MSX2P35548 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC6.56□□□□□ -1.36
MSX2P35548 CSMD2-210ENST00000619121 13430 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
MSX2P35548 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 CADPS-220ENST00000613879 1804 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 OR4M1-201ENST00000315957 1116 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
MSX2P35548 RPL24P4-201ENST00000326586 421 ntBASIC6.56□□□□□ -1.36
MSX2P35548 RN7SKP211-201ENST00000363328 315 ntBASIC6.56□□□□□ -1.36
MSX2P35548 RNA5SP260-201ENST00000363849 111 ntBASIC6.56□□□□□ -1.36
MSX2P35548 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC6.56□□□□□ -1.36
MSX2P35548 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC6.56□□□□□ -1.36
MSX2P35548 TRAV19-201ENST00000390447 467 ntAPPRIS P1 BASIC6.56□□□□□ -1.36
MSX2P35548 IYD-205ENST00000392256 882 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 PSG11-203ENST00000403486 1163 ntTSL 2 BASIC6.56□□□□□ -1.36
MSX2P35548 FAM26D-203ENST00000405399 1165 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 FTH1P26-201ENST00000406512 701 ntBASIC6.56□□□□□ -1.36
MSX2P35548 AL591368.1-202ENST00000413050 548 ntTSL 3 BASIC6.56□□□□□ -1.36
MSX2P35548 CLCN3P1-201ENST00000423965 1017 ntBASIC6.56□□□□□ -1.36
MSX2P35548 AC079584.1-201ENST00000426716 464 ntTSL 3 BASIC6.56□□□□□ -1.36
MSX2P35548 LINC01393-202ENST00000435981 1187 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 LSM3P3-201ENST00000436601 306 ntBASIC6.56□□□□□ -1.36
MSX2P35548 SMIM30-204ENST00000441359 962 ntAPPRIS P1 TSL 2 BASIC6.56□□□□□ -1.36
MSX2P35548 LAPTM4BP1-201ENST00000447781 690 ntBASIC6.56□□□□□ -1.36
MSX2P35548 AL121718.1-201ENST00000449463 387 ntTSL 3 BASIC6.56□□□□□ -1.36
MSX2P35548 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC6.56□□□□□ -1.36
MSX2P35548 C1DP3-201ENST00000455013 423 ntBASIC6.56□□□□□ -1.36
MSX2P35548 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC6.56□□□□□ -1.36
MSX2P35548 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC6.56□□□□□ -1.36
MSX2P35548 NPM1P17-201ENST00000479221 602 ntBASIC6.56□□□□□ -1.36
MSX2P35548 AC026254.1-201ENST00000479473 431 ntBASIC6.56□□□□□ -1.36
MSX2P35548 AMTN-202ENST00000504451 761 ntAPPRIS ALT1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 AC091435.1-201ENST00000505442 584 ntBASIC6.56□□□□□ -1.36
MSX2P35548 AC117473.1-201ENST00000508616 392 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSX2P35548 LINC02479-201ENST00000508942 630 ntTSL 3 BASIC6.56□□□□□ -1.36
MSX2P35548 AC026700.1-201ENST00000512074 544 ntBASIC6.56□□□□□ -1.36
MSX2P35548 CRYAB-203ENST00000525823 915 ntTSL 2 BASIC6.56□□□□□ -1.36
MSX2P35548 AC084361.1-201ENST00000537730 607 ntTSL 3 BASIC6.56□□□□□ -1.36
MSX2P35548 AC074029.2-201ENST00000551045 634 ntBASIC6.56□□□□□ -1.36
MSX2P35548 AL132857.1-201ENST00000555180 708 ntBASIC6.56□□□□□ -1.36
MSX2P35548 AC025430.1-201ENST00000561324 498 ntTSL 3 BASIC6.56□□□□□ -1.36
MSX2P35548 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC6.56□□□□□ -1.36
MSX2P35548 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC6.56□□□□□ -1.36
MSX2P35548 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC6.56□□□□□ -1.36
MSX2P35548 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC6.56□□□□□ -1.36
MSX2P35548 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC6.56□□□□□ -1.36
MSX2P35548 EIF1-207ENST00000591776 797 ntTSL 4 BASIC6.56□□□□□ -1.36
MSX2P35548 GAS5-AS1-201ENST00000602767 694 ntBASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 83.4 ms