Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC078778.2-201ENST00000553061 567 ntTSL 5 BASIC6.12□□□□□ -1.43
SOX3P41225 LINC02318-201ENST00000553785 1334 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC6.12□□□□□ -1.43
SOX3P41225 AC103968.1-201ENST00000557841 573 ntBASIC6.12□□□□□ -1.43
SOX3P41225 AC022558.1-201ENST00000560450 454 ntTSL 3 BASIC6.12□□□□□ -1.43
SOX3P41225 MRPS21P9-201ENST00000571150 257 ntBASIC6.12□□□□□ -1.43
SOX3P41225 LINC01916-201ENST00000582028 559 ntTSL 4 BASIC6.12□□□□□ -1.43
SOX3P41225 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC6.12□□□□□ -1.43
SOX3P41225 AC245052.7-201ENST00000601161 359 ntBASIC6.12□□□□□ -1.43
SOX3P41225 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.12□□□□□ -1.43
SOX3P41225 AC004241.2-201ENST00000614562 444 ntBASIC6.12□□□□□ -1.43
SOX3P41225 MIR6823-201ENST00000622118 61 ntBASIC6.12□□□□□ -1.43
SOX3P41225 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC6.12□□□□□ -1.43
SOX3P41225 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC6.12□□□□□ -1.43
SOX3P41225 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 PLD1-202ENST00000351298 5604 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 AC010401.2-201ENST00000575137 4934 ntBASIC6.12□□□□□ -1.43
SOX3P41225 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
SOX3P41225 DPY19L1P1-201ENST00000417811 2594 ntBASIC6.12□□□□□ -1.43
SOX3P41225 AP000547.3-204ENST00000588548 2523 ntBASIC6.11□□□□□ -1.43
SOX3P41225 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SOX3P41225 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SOX3P41225 PGM3-215ENST00000616566 5905 ntTSL 2 BASIC6.11□□□□□ -1.43
SOX3P41225 AL669831.5-218ENST00000591702 1873 ntBASIC6.11□□□□□ -1.43
SOX3P41225 AL731556.1-201ENST00000394628 3711 ntBASIC6.11□□□□□ -1.43
SOX3P41225 MAPK10-270ENST00000641102 3538 ntBASIC6.11□□□□□ -1.43
SOX3P41225 AC007485.2-201ENST00000623493 1667 ntBASIC6.11□□□□□ -1.43
SOX3P41225 OXCT1-206ENST00000512084 1593 ntTSL 2 BASIC6.11□□□□□ -1.43
SOX3P41225 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.11□□□□□ -1.43
SOX3P41225 CCDC125-202ENST00000396496 4198 ntAPPRIS P1 TSL 5 BASIC6.11□□□□□ -1.43
SOX3P41225 AC006213.6-201ENST00000623722 4179 ntBASIC6.11□□□□□ -1.43
SOX3P41225 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SOX3P41225 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC6.11□□□□□ -1.43
SOX3P41225 TRAV13-1-201ENST00000390436 360 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
SOX3P41225 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC6.11□□□□□ -1.43
SOX3P41225 AC009965.1-201ENST00000411436 570 ntTSL 4 BASIC6.11□□□□□ -1.43
SOX3P41225 AL929472.1-201ENST00000417484 429 ntBASIC6.11□□□□□ -1.43
SOX3P41225 AC114498.1-201ENST00000423796 607 ntTSL 5 BASIC6.11□□□□□ -1.43
SOX3P41225 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC6.11□□□□□ -1.43
SOX3P41225 COL11A2P1-205ENST00000441798 676 ntBASIC6.11□□□□□ -1.43
SOX3P41225 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC6.11□□□□□ -1.43
SOX3P41225 AL035443.1-201ENST00000456631 304 ntTSL 3 BASIC6.11□□□□□ -1.43
SOX3P41225 AC117395.1-201ENST00000487390 403 ntBASIC6.11□□□□□ -1.43
SOX3P41225 AC093870.1-201ENST00000506837 213 ntBASIC6.11□□□□□ -1.43
SOX3P41225 ANAPC10-213ENST00000512680 505 ntTSL 3 BASIC6.11□□□□□ -1.43
SOX3P41225 AC103843.1-201ENST00000527318 682 ntTSL 4 BASIC6.11□□□□□ -1.43
SOX3P41225 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SOX3P41225 AC009852.1-201ENST00000564058 465 ntTSL 3 BASIC6.11□□□□□ -1.43
SOX3P41225 AC009063.2-203ENST00000567860 745 ntTSL 2 BASIC6.11□□□□□ -1.43
SOX3P41225 TTC39C-AS1-201ENST00000579713 817 ntTSL 5 BASIC6.11□□□□□ -1.43
SOX3P41225 BPIFA4P-204ENST00000605211 656 ntTSL 2 BASIC6.11□□□□□ -1.43
SOX3P41225 AC093635.1-201ENST00000609028 555 ntBASIC6.11□□□□□ -1.43
SOX3P41225 MIR6889-201ENST00000613185 59 ntBASIC6.11□□□□□ -1.43
SOX3P41225 NOX1-202ENST00000372960 2418 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SOX3P41225 CLEC5A-206ENST00000546910 3511 ntAPPRIS P1 TSL 1 (best) BASIC6.11□□□□□ -1.43
SOX3P41225 PDZRN4-201ENST00000298919 3411 ntTSL 2 BASIC6.11□□□□□ -1.43
SOX3P41225 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC6.11□□□□□ -1.43
SOX3P41225 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
SOX3P41225 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC6.11□□□□□ -1.43
SOX3P41225 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC6.11□□□□□ -1.43
SOX3P41225 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC6.11□□□□□ -1.43
SOX3P41225 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC6.11□□□□□ -1.43
SOX3P41225 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC6.11□□□□□ -1.43
SOX3P41225 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC6.1□□□□□ -1.43
SOX3P41225 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC6.1□□□□□ -1.43
SOX3P41225 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
SOX3P41225 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SOX3P41225 SATL1-201ENST00000395409 2192 ntAPPRIS P1 TSL 5 BASIC6.1□□□□□ -1.43
SOX3P41225 CASP5-201ENST00000260315 1414 ntTSL 5 BASIC6.1□□□□□ -1.43
SOX3P41225 PSG6-204ENST00000402603 1412 ntTSL 5 BASIC6.1□□□□□ -1.43
SOX3P41225 KIF20A-201ENST00000394894 3201 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SOX3P41225 ACTR3C-201ENST00000252071 1218 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SOX3P41225 VTRNA3-1P-201ENST00000362552 102 ntBASIC6.1□□□□□ -1.43
SOX3P41225 CAV1-203ENST00000393468 845 ntAPPRIS ALT1 TSL 1 (best) BASIC6.1□□□□□ -1.43
SOX3P41225 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC6.1□□□□□ -1.43
SOX3P41225 SMC4P1-201ENST00000414479 527 ntBASIC6.1□□□□□ -1.43
SOX3P41225 LINC01114-201ENST00000421071 482 ntTSL 3 BASIC6.1□□□□□ -1.43
SOX3P41225 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC6.1□□□□□ -1.43
SOX3P41225 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC6.1□□□□□ -1.43
SOX3P41225 AL354953.1-201ENST00000457852 479 ntTSL 5 BASIC6.1□□□□□ -1.43
SOX3P41225 SULT1D1P-201ENST00000458020 882 ntBASIC6.1□□□□□ -1.43
SOX3P41225 RPS7P10-201ENST00000464254 603 ntBASIC6.1□□□□□ -1.43
SOX3P41225 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC6.1□□□□□ -1.43
SOX3P41225 RN7SL413P-201ENST00000482700 297 ntBASIC6.1□□□□□ -1.43
SOX3P41225 AC078788.1-201ENST00000498457 634 ntTSL 3 BASIC6.1□□□□□ -1.43
SOX3P41225 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC6.1□□□□□ -1.43
SOX3P41225 AC093664.1-201ENST00000511779 289 ntBASIC6.1□□□□□ -1.43
SOX3P41225 EIF4EP5-201ENST00000528228 640 ntBASIC6.1□□□□□ -1.43
SOX3P41225 OR5AP2-201ENST00000544374 1006 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
SOX3P41225 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC6.1□□□□□ -1.43
SOX3P41225 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC6.1□□□□□ -1.43
SOX3P41225 AC037479.1-201ENST00000558361 625 ntBASIC6.1□□□□□ -1.43
SOX3P41225 AC026956.1-201ENST00000558741 396 ntBASIC6.1□□□□□ -1.43
SOX3P41225 AC023813.1-201ENST00000565055 306 ntTSL 5 BASIC6.1□□□□□ -1.43
SOX3P41225 AP003115.1-201ENST00000569849 463 ntBASIC6.1□□□□□ -1.43
SOX3P41225 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC6.1□□□□□ -1.43
SOX3P41225 AC005180.2-201ENST00000585620 562 ntTSL 3 BASIC6.1□□□□□ -1.43
SOX3P41225 WBP1LP11-201ENST00000586141 328 ntBASIC6.1□□□□□ -1.43
SOX3P41225 AL049840.5-201ENST00000602827 552 ntBASIC6.1□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 69.3 ms