Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CPS1-201ENST00000233072 5821 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
HMGA1P17096 TEAD1-205ENST00000527575 3063 ntTSL 5 BASIC6.6□□□□□ -1.35
HMGA1P17096 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.6□□□□□ -1.35
HMGA1P17096 MEIS1-209ENST00000488550 5111 ntAPPRIS ALT1 TSL 1 (best) BASIC6.6□□□□□ -1.35
HMGA1P17096 AC025809.2-201ENST00000625085 1802 ntBASIC6.6□□□□□ -1.35
HMGA1P17096 GSTCD-201ENST00000360505 2154 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HMGA1P17096 FRMD3-207ENST00000621208 5064 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
HMGA1P17096 AC093225.1-201ENST00000506867 1408 ntBASIC6.59□□□□□ -1.35
HMGA1P17096 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
HMGA1P17096 AL359976.1-201ENST00000418655 3528 ntBASIC6.59□□□□□ -1.35
HMGA1P17096 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
HMGA1P17096 FO082842.1-201ENST00000423552 1370 ntBASIC6.59□□□□□ -1.35
HMGA1P17096 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.59□□□□□ -1.35
HMGA1P17096 CNTRL-204ENST00000373847 3372 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
HMGA1P17096 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC6.59□□□□□ -1.35
HMGA1P17096 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HMGA1P17096 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HMGA1P17096 EIF3EP1-201ENST00000433978 1316 ntBASIC6.59□□□□□ -1.35
HMGA1P17096 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC6.59□□□□□ -1.35
HMGA1P17096 MCTP2-208ENST00000557742 1957 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
HMGA1P17096 NBPF12-203ENST00000611443 5594 ntTSL 5 BASIC6.59□□□□□ -1.35
HMGA1P17096 SPATA31C1-201ENST00000420021 3895 ntBASIC6.59□□□□□ -1.35
HMGA1P17096 GRAMD1B-207ENST00000529750 7723 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
HMGA1P17096 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC6.59□□□□□ -1.35
HMGA1P17096 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HMGA1P17096 RNU1-24P-201ENST00000364285 165 ntBASIC6.59□□□□□ -1.35
HMGA1P17096 ZNF385D-AS1-201ENST00000412369 705 ntTSL 3 BASIC6.59□□□□□ -1.35
HMGA1P17096 IGLV3-4-201ENST00000432300 244 ntBASIC6.59□□□□□ -1.35
HMGA1P17096 AC023141.3-201ENST00000436698 278 ntBASIC6.59□□□□□ -1.35
HMGA1P17096 EIF5AP4-201ENST00000441206 465 ntBASIC6.59□□□□□ -1.35
HMGA1P17096 AC068228.1-201ENST00000461723 211 ntBASIC6.59□□□□□ -1.35
HMGA1P17096 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC6.59□□□□□ -1.35
HMGA1P17096 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC6.59□□□□□ -1.35
HMGA1P17096 LSM3P4-201ENST00000502948 309 ntBASIC6.59□□□□□ -1.35
HMGA1P17096 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC6.59□□□□□ -1.35
HMGA1P17096 LDHAP1-201ENST00000509421 992 ntBASIC6.59□□□□□ -1.35
HMGA1P17096 C3orf14-207ENST00000542214 768 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HMGA1P17096 RNASE11-208ENST00000555841 886 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.35
HMGA1P17096 AC023906.3-201ENST00000559825 874 ntTSL 5 BASIC6.59□□□□□ -1.35
HMGA1P17096 ADAMTS7P4-205ENST00000560651 453 ntTSL 3 BASIC6.59□□□□□ -1.35
HMGA1P17096 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.59□□□□□ -1.35
HMGA1P17096 LINC01908-201ENST00000583148 555 ntTSL 4 BASIC6.59□□□□□ -1.35
HMGA1P17096 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC6.59□□□□□ -1.35
HMGA1P17096 AC097467.4-201ENST00000605504 141 ntBASIC6.59□□□□□ -1.35
HMGA1P17096 LINC02362-201ENST00000608785 516 ntTSL 3 BASIC6.59□□□□□ -1.35
HMGA1P17096 LINC02362-202ENST00000610683 724 ntTSL 5 BASIC6.59□□□□□ -1.35
HMGA1P17096 Metazoa_SRP.94-201ENST00000612609 250 ntBASIC6.59□□□□□ -1.35
HMGA1P17096 AL391095.2-201ENST00000615228 378 ntTSL 3 BASIC6.59□□□□□ -1.35
HMGA1P17096 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
HMGA1P17096 LINC02044-201ENST00000490139 2502 ntTSL 2 BASIC6.59□□□□□ -1.35
HMGA1P17096 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HMGA1P17096 NCOA4P3-201ENST00000513203 1877 ntBASIC6.59□□□□□ -1.35
HMGA1P17096 ZNF559-ZNF177-202ENST00000446085 2470 ntTSL 5 BASIC6.59□□□□□ -1.35
HMGA1P17096 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC6.59□□□□□ -1.35
HMGA1P17096 ANKRD44-202ENST00000328737 3686 ntTSL 2 BASIC6.59□□□□□ -1.35
HMGA1P17096 LDAH-212ENST00000619656 3663 ntTSL 2 BASIC6.59□□□□□ -1.35
HMGA1P17096 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
HMGA1P17096 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
HMGA1P17096 JPX-212ENST00000639185 9658 ntTSL 5 BASIC6.59□□□□□ -1.35
HMGA1P17096 UNC79-202ENST00000393151 7908 ntTSL 5 BASIC6.59□□□□□ -1.36
HMGA1P17096 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.36
HMGA1P17096 TRIM6-202ENST00000380097 3403 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
HMGA1P17096 CNTN5-202ENST00000418526 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGA1P17096 GBP3-202ENST00000370481 3067 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGA1P17096 LINC01741-201ENST00000427173 1666 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGA1P17096 CENPJ-206ENST00000616936 5020 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGA1P17096 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGA1P17096 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGA1P17096 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
HMGA1P17096 RAI14-228ENST00000515799 3486 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGA1P17096 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGA1P17096 NPL-212ENST00000614468 2376 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGA1P17096 CDY10P-201ENST00000452415 1567 ntBASIC6.58□□□□□ -1.36
HMGA1P17096 FAR2-201ENST00000182377 2095 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGA1P17096 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGA1P17096 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGA1P17096 MORF4-201ENST00000447135 971 ntBASIC6.58□□□□□ -1.36
HMGA1P17096 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGA1P17096 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGA1P17096 AP001858.2-201ENST00000536213 601 ntBASIC6.58□□□□□ -1.36
HMGA1P17096 RPL36A-209ENST00000553110 429 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGA1P17096 LINC01580-202ENST00000555364 661 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGA1P17096 AC092332.1-201ENST00000563684 829 ntBASIC6.58□□□□□ -1.36
HMGA1P17096 AC007346.1-201ENST00000569208 867 ntBASIC6.58□□□□□ -1.36
HMGA1P17096 MIR5095-201ENST00000578844 88 ntBASIC6.58□□□□□ -1.36
HMGA1P17096 AC008507.3-201ENST00000585753 472 ntBASIC6.58□□□□□ -1.36
HMGA1P17096 AP001823.1-201ENST00000604056 1003 ntBASIC6.58□□□□□ -1.36
HMGA1P17096 AL161457.2-204ENST00000609241 869 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGA1P17096 Metazoa_SRP.134-201ENST00000610965 327 ntBASIC6.58□□□□□ -1.36
HMGA1P17096 AL136097.3-201ENST00000611097 505 ntBASIC6.58□□□□□ -1.36
HMGA1P17096 FAM27E2-201ENST00000619668 403 ntBASIC6.58□□□□□ -1.36
HMGA1P17096 MIR7159-201ENST00000620587 66 ntBASIC6.58□□□□□ -1.36
HMGA1P17096 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC6.58□□□□□ -1.36
HMGA1P17096 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGA1P17096 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
HMGA1P17096 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGA1P17096 AL133243.4-201ENST00000623116 3109 ntBASIC6.58□□□□□ -1.36
HMGA1P17096 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC6.58□□□□□ -1.36
HMGA1P17096 ATP13A5-201ENST00000342358 4027 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
HMGA1P17096 TIMM21-201ENST00000169551 3095 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms