Protein–RNA interactions for Protein: Q95604

HLA-C, HLA class I histocompatibility antigen, Cw-17 alpha chain, humanhuman

Predictions only

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-CQ95604 RUNX1T1-252ENST00000617740 7627 ntAPPRIS P3 TSL 5 BASIC8.57□□□□□ -1.04
HLA-CQ95604 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC8.57□□□□□ -1.04
HLA-CQ95604 PLCH1-204ENST00000460012 6413 ntAPPRIS P3 TSL 5 BASIC8.57□□□□□ -1.04
HLA-CQ95604 WNT2B-201ENST00000256640 2819 ntTSL 2 BASIC8.57□□□□□ -1.04
HLA-CQ95604 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
HLA-CQ95604 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
HLA-CQ95604 KLRG1-202ENST00000356986 1206 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
HLA-CQ95604 SGMS1-201ENST00000361543 1096 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
HLA-CQ95604 RNA5SP378-201ENST00000363646 120 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 SPANXN4-201ENST00000370504 560 ntAPPRIS ALT2 TSL 5 BASIC8.57□□□□□ -1.04
HLA-CQ95604 MCM8-203ENST00000378886 3835 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
HLA-CQ95604 NUPR1-202ENST00000395641 550 ntTSL 2 BASIC8.57□□□□□ -1.04
HLA-CQ95604 SDCBPP3-201ENST00000419629 891 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 AC009237.2-201ENST00000421358 284 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 AC068599.1-201ENST00000422558 567 ntTSL 4 BASIC8.57□□□□□ -1.04
HLA-CQ95604 AC008850.1-201ENST00000427546 362 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 FMO7P-201ENST00000436045 768 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC8.57□□□□□ -1.04
HLA-CQ95604 UBE2V1P3-201ENST00000439651 417 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 RPL15P1-201ENST00000439981 600 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 AC005099.1-201ENST00000442083 610 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC8.57□□□□□ -1.04
HLA-CQ95604 YRDCP3-201ENST00000456507 480 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 RPL7AP26-201ENST00000488538 813 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 RPS4XP15-201ENST00000489210 795 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 RPL41-202ENST00000501597 469 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
HLA-CQ95604 AC113383.1-205ENST00000502253 792 ntTSL 2 BASIC8.57□□□□□ -1.04
HLA-CQ95604 OR5M14P-201ENST00000506803 618 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 LRRC34P2-201ENST00000514850 553 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 AP000880.1-202ENST00000526487 588 ntTSL 3 BASIC8.57□□□□□ -1.04
HLA-CQ95604 RRAS2-210ENST00000534746 993 ntTSL 2 BASIC8.57□□□□□ -1.04
HLA-CQ95604 AC022367.1-202ENST00000535066 537 ntTSL 3 BASIC8.57□□□□□ -1.04
HLA-CQ95604 AC135388.1-201ENST00000536512 353 ntTSL 5 BASIC8.57□□□□□ -1.04
HLA-CQ95604 AC073912.2-201ENST00000542821 317 ntTSL 3 BASIC8.57□□□□□ -1.04
HLA-CQ95604 PPIAL4D-201ENST00000544708 495 ntAPPRIS P1 BASIC8.57□□□□□ -1.04
HLA-CQ95604 AL445363.1-202ENST00000553697 545 ntTSL 3 BASIC8.57□□□□□ -1.04
HLA-CQ95604 AL358332.1-201ENST00000555649 813 ntTSL 5 BASIC8.57□□□□□ -1.04
HLA-CQ95604 AL049870.4-201ENST00000555741 486 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC8.57□□□□□ -1.04
HLA-CQ95604 LCMT1-AS1-202ENST00000563962 766 ntTSL 3 BASIC8.57□□□□□ -1.04
HLA-CQ95604 AC027243.2-201ENST00000602530 724 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 AL009028.1-201ENST00000604895 802 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 Z98200.1-201ENST00000607298 470 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 LINC00343-210ENST00000608220 806 ntTSL 5 BASIC8.57□□□□□ -1.04
HLA-CQ95604 AL139089.1-201ENST00000620372 975 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 AC005899.6-201ENST00000620729 297 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 SPINK6-203ENST00000621437 605 ntAPPRIS P1 TSL 3 BASIC8.57□□□□□ -1.04
HLA-CQ95604 AC015722.2-201ENST00000622210 551 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 AL353898.2-201ENST00000623000 255 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 AC110769.3-201ENST00000624567 1173 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 RCAN1-208ENST00000482533 2686 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
HLA-CQ95604 NT5C3A-203ENST00000396152 1788 ntAPPRIS P3 TSL 1 (best) BASIC8.57□□□□□ -1.04
HLA-CQ95604 ENO1P4-201ENST00000416471 1785 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 DCP1A-201ENST00000294241 1853 ntTSL 2 BASIC8.57□□□□□ -1.04
HLA-CQ95604 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
HLA-CQ95604 PRUNE1-203ENST00000368935 2238 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
HLA-CQ95604 ADAM9-209ENST00000487273 3839 ntAPPRIS P1 TSL 1 (best) BASIC8.57□□□□□ -1.04
HLA-CQ95604 AC084876.2-201ENST00000624844 1709 ntBASIC8.57□□□□□ -1.04
HLA-CQ95604 MED12-202ENST00000374080 6795 ntAPPRIS P2 TSL 1 (best) BASIC8.57□□□□□ -1.04
HLA-CQ95604 TPD52-204ENST00000517427 2596 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
HLA-CQ95604 JADE1-202ENST00000413543 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC8.57□□□□□ -1.04
HLA-CQ95604 FAM107B-201ENST00000181796 3785 ntTSL 2 BASIC8.57□□□□□ -1.04
HLA-CQ95604 TOM1L1-220ENST00000575333 1849 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
HLA-CQ95604 ZNF23-202ENST00000358700 2692 ntTSL 5 BASIC8.57□□□□□ -1.04
HLA-CQ95604 KIF1B-211ENST00000620295 8624 ntTSL 1 (best) BASIC8.57□□□□□ -1.04
HLA-CQ95604 AL365217.1-201ENST00000398578 2436 ntBASIC8.56□□□□□ -1.04
HLA-CQ95604 DCAF4-212ENST00000553457 2896 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
HLA-CQ95604 TNIK-211ENST00000475336 3807 ntAPPRIS ALT2 TSL 1 (best) BASIC8.56□□□□□ -1.04
HLA-CQ95604 CLDN2-201ENST00000336803 2959 ntAPPRIS P1 TSL 2 BASIC8.56□□□□□ -1.04
HLA-CQ95604 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
HLA-CQ95604 ARFIP1-205ENST00000451320 3424 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
HLA-CQ95604 CNDP1-203ENST00000582365 4111 ntAPPRIS ALT2 TSL 5 BASIC8.56□□□□□ -1.04
HLA-CQ95604 CALCOCO1-210ENST00000548263 3888 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
HLA-CQ95604 CBFA2T2-204ENST00000359606 7274 ntTSL 2 BASIC8.56□□□□□ -1.04
HLA-CQ95604 ZNF259P1-202ENST00000572422 4912 ntBASIC8.56□□□□□ -1.04
HLA-CQ95604 LDAH-201ENST00000237822 2907 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
HLA-CQ95604 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC8.56□□□□□ -1.04
HLA-CQ95604 ADK-201ENST00000286621 1169 ntAPPRIS P4 TSL 1 (best) BASIC8.56□□□□□ -1.04
HLA-CQ95604 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC8.56□□□□□ -1.04
HLA-CQ95604 OR1J2-201ENST00000335302 942 ntAPPRIS P1 BASIC8.56□□□□□ -1.04
HLA-CQ95604 OR10D1P-201ENST00000355343 936 ntBASIC8.56□□□□□ -1.04
HLA-CQ95604 OR11H13P-201ENST00000359695 979 ntBASIC8.56□□□□□ -1.04
HLA-CQ95604 MIR146B-201ENST00000365699 73 ntBASIC8.56□□□□□ -1.04
HLA-CQ95604 ESD-201ENST00000378697 1079 ntTSL 5 BASIC8.56□□□□□ -1.04
HLA-CQ95604 ISY1-202ENST00000393292 988 ntTSL 5 BASIC8.56□□□□□ -1.04
HLA-CQ95604 RPL31P1-201ENST00000398116 372 ntBASIC8.56□□□□□ -1.04
HLA-CQ95604 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC8.56□□□□□ -1.04
HLA-CQ95604 CYCSP45-201ENST00000402289 315 ntBASIC8.56□□□□□ -1.04
HLA-CQ95604 AC099535.1-201ENST00000408928 371 ntBASIC8.56□□□□□ -1.04
HLA-CQ95604 RNU2-18P-201ENST00000411224 162 ntBASIC8.56□□□□□ -1.04
HLA-CQ95604 AC002511.2-201ENST00000413796 450 ntTSL 2 BASIC8.56□□□□□ -1.04
HLA-CQ95604 LINC01031-201ENST00000420807 779 ntTSL 3 BASIC8.56□□□□□ -1.04
HLA-CQ95604 RPSAP1-201ENST00000421328 880 ntBASIC8.56□□□□□ -1.04
HLA-CQ95604 PPIL1P1-201ENST00000423936 499 ntBASIC8.56□□□□□ -1.04
HLA-CQ95604 ZEB1-AS1-202ENST00000424191 320 ntTSL 3 BASIC8.56□□□□□ -1.04
HLA-CQ95604 RPL7P44-201ENST00000424827 742 ntBASIC8.56□□□□□ -1.04
HLA-CQ95604 AC104843.2-201ENST00000427666 297 ntBASIC8.56□□□□□ -1.04
HLA-CQ95604 NPM1P22-201ENST00000427761 952 ntBASIC8.56□□□□□ -1.04
HLA-CQ95604 USP9YP9-201ENST00000429406 715 ntBASIC8.56□□□□□ -1.04
HLA-CQ95604 MTCO1P54-201ENST00000430139 712 ntBASIC8.56□□□□□ -1.04
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms