Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 AC022973.3-201ENST00000521014 467 ntTSL 5 BASIC4.84□□□□□ -1.63
HLA-DQA1P01909 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC4.84□□□□□ -1.63
HLA-DQA1P01909 AC083973.1-201ENST00000523459 590 ntTSL 2 BASIC4.84□□□□□ -1.63
HLA-DQA1P01909 AP003721.1-201ENST00000543907 864 ntTSL 3 BASIC4.84□□□□□ -1.63
HLA-DQA1P01909 AC011603.2-202ENST00000552893 504 ntTSL 3 BASIC4.84□□□□□ -1.63
HLA-DQA1P01909 AC090971.3-201ENST00000557871 1041 ntBASIC4.84□□□□□ -1.63
HLA-DQA1P01909 AL031846.1-201ENST00000560933 314 ntBASIC4.84□□□□□ -1.63
HLA-DQA1P01909 AC008551.1-201ENST00000575612 405 ntTSL 5 BASIC4.84□□□□□ -1.63
HLA-DQA1P01909 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC4.84□□□□□ -1.63
HLA-DQA1P01909 SIGLEC31P-201ENST00000594237 551 ntBASIC4.84□□□□□ -1.63
HLA-DQA1P01909 SIGLECL1-205ENST00000597824 870 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.63
HLA-DQA1P01909 AL035410.2-201ENST00000604963 864 ntBASIC4.84□□□□□ -1.63
HLA-DQA1P01909 Z98949.1-213ENST00000608921 856 ntTSL 5 BASIC4.84□□□□□ -1.63
HLA-DQA1P01909 IFNA5-201ENST00000610521 987 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
HLA-DQA1P01909 ELMO2P1-201ENST00000611569 473 ntTSL 5 BASIC4.84□□□□□ -1.63
HLA-DQA1P01909 AC024255.1-201ENST00000614376 102 ntBASIC4.84□□□□□ -1.63
HLA-DQA1P01909 MMP2-AS1-203ENST00000620495 625 ntTSL 3 BASIC4.84□□□□□ -1.63
HLA-DQA1P01909 LAMTOR5-AS1-248ENST00000630488 703 ntTSL 5 BASIC4.84□□□□□ -1.63
HLA-DQA1P01909 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
HLA-DQA1P01909 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
HLA-DQA1P01909 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC4.84□□□□□ -1.64
HLA-DQA1P01909 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.64
HLA-DQA1P01909 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC4.84□□□□□ -1.64
HLA-DQA1P01909 AC024651.2-201ENST00000562480 2098 ntBASIC4.84□□□□□ -1.64
HLA-DQA1P01909 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
HLA-DQA1P01909 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
HLA-DQA1P01909 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 DEPDC1B-201ENST00000265036 2499 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 DNM3OS-201ENST00000417354 4358 ntTSL 4 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AL359955.1-201ENST00000455242 3275 ntBASIC4.83□□□□□ -1.64
HLA-DQA1P01909 TBC1D19-205ENST00000511789 1386 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 NDUFB4-201ENST00000184266 671 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 RNA5SP453-201ENST00000362503 119 ntBASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AL391869.1-201ENST00000414581 475 ntTSL 3 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 LINC01704-201ENST00000414848 834 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 UBE2V1P14-201ENST00000415815 558 ntBASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AC015977.1-201ENST00000418887 292 ntBASIC4.83□□□□□ -1.64
HLA-DQA1P01909 OR5P4P-201ENST00000424698 917 ntBASIC4.83□□□□□ -1.64
HLA-DQA1P01909 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 LINC01723-201ENST00000432244 601 ntTSL 2 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 SDHC-204ENST00000432287 460 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 ST13P2-201ENST00000438916 1109 ntBASIC4.83□□□□□ -1.64
HLA-DQA1P01909 KRT8P51-201ENST00000438938 274 ntBASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AL161626.1-201ENST00000441480 490 ntBASIC4.83□□□□□ -1.64
HLA-DQA1P01909 MAGEC3-203ENST00000443323 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AL139135.2-201ENST00000445040 433 ntBASIC4.83□□□□□ -1.64
HLA-DQA1P01909 NEURL1-AS1-201ENST00000447820 439 ntTSL 2 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 DPP10-AS1-202ENST00000448663 644 ntTSL 3 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AC099328.2-201ENST00000465347 455 ntTSL 3 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AC097110.1-201ENST00000507344 768 ntTSL 2 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 C4orf19-203ENST00000508175 828 ntTSL 3 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 LDHC-203ENST00000535809 757 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 LDHC-204ENST00000536880 957 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 PCAT29-202ENST00000558941 545 ntTSL 4 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AC026458.1-201ENST00000564330 438 ntBASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AC061975.3-201ENST00000583209 244 ntBASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AC012358.3-204ENST00000599475 978 ntTSL 3 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AC104117.5-201ENST00000606195 547 ntBASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AC061709.1-202ENST00000615029 527 ntTSL 3 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AL513321.2-202ENST00000634479 921 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AC022726.2-201ENST00000634673 547 ntBASIC4.83□□□□□ -1.64
HLA-DQA1P01909 LINC01427-203ENST00000635277 781 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AL160396.1-201ENST00000637433 575 ntTSL 4 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AC116667.2-201ENST00000641075 823 ntBASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AC119674.1-209ENST00000642031 997 ntBASIC4.83□□□□□ -1.64
HLA-DQA1P01909 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AC007731.1-202ENST00000610338 1870 ntTSL 5 BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AL161912.4-201ENST00000623889 2468 ntBASIC4.83□□□□□ -1.64
HLA-DQA1P01909 AP002800.1-201ENST00000624982 2225 ntBASIC4.82□□□□□ -1.64
HLA-DQA1P01909 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
HLA-DQA1P01909 PUM1-206ENST00000426105 4043 ntAPPRIS ALT1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HLA-DQA1P01909 BIN2P1-201ENST00000504996 1530 ntBASIC4.82□□□□□ -1.64
HLA-DQA1P01909 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
HLA-DQA1P01909 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HLA-DQA1P01909 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HLA-DQA1P01909 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HLA-DQA1P01909 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC4.82□□□□□ -1.64
HLA-DQA1P01909 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HLA-DQA1P01909 S100Z-201ENST00000317593 1468 ntAPPRIS P1 TSL 3 BASIC4.82□□□□□ -1.64
HLA-DQA1P01909 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HLA-DQA1P01909 MTND5P12-201ENST00000502851 1449 ntBASIC4.82□□□□□ -1.64
HLA-DQA1P01909 AL137141.1-201ENST00000624622 4836 ntBASIC4.82□□□□□ -1.64
HLA-DQA1P01909 CNIH1-201ENST00000216416 4793 ntAPPRIS P2 TSL 1 (best) BASIC4.82□□□□□ -1.64
HLA-DQA1P01909 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
HLA-DQA1P01909 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
HLA-DQA1P01909 GOT2P1-201ENST00000440922 1309 ntBASIC4.82□□□□□ -1.64
HLA-DQA1P01909 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
HLA-DQA1P01909 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 84.5 ms