Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL138693.1-201ENST00000622219 129 ntBASIC4.99□□□□□ -1.61
HLA-DMBP28068 AL450990.1-201ENST00000632868 582 ntTSL 4 BASIC4.99□□□□□ -1.61
HLA-DMBP28068 RPS27L-208ENST00000635699 693 ntTSL 5 BASIC4.99□□□□□ -1.61
HLA-DMBP28068 KAT14-201ENST00000377681 3483 ntAPPRIS ALT1 TSL 5 BASIC4.99□□□□□ -1.61
HLA-DMBP28068 MBNL2-203ENST00000376673 4632 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
HLA-DMBP28068 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
HLA-DMBP28068 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HLA-DMBP28068 AKAP17BP-201ENST00000431706 2719 ntBASIC4.99□□□□□ -1.61
HLA-DMBP28068 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC4.99□□□□□ -1.61
HLA-DMBP28068 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
HLA-DMBP28068 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 RAPGEF4-204ENST00000409036 3975 ntTSL 5 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 LINC01440-201ENST00000416190 1340 ntTSL 5 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 DYNC2LI1-210ENST00000605786 1346 ntAPPRIS ALT1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 AC004023.1-201ENST00000561473 1744 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 AL662795.2-201ENST00000624252 3706 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 C5orf63-201ENST00000296662 966 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 SCG5-201ENST00000300175 1238 ntAPPRIS P4 TSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 OR13F1-201ENST00000334726 960 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 OR11H13P-201ENST00000359695 979 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 RN7SKP189-201ENST00000365042 330 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 AL591503.1-201ENST00000366224 477 ntTSL 5 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 RNU6-316P-201ENST00000391027 107 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 ATP6V1E1-203ENST00000399798 994 ntTSL 2 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 AL353626.3-201ENST00000413399 657 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 LINC01221-201ENST00000432488 662 ntTSL 3 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 FAM155A-IT1-201ENST00000449551 819 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 AC016822.1-201ENST00000457975 439 ntTSL 3 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 RN7SL372P-201ENST00000461982 298 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 BBOF1-202ENST00000463558 550 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 RN7SL790P-201ENST00000474043 298 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 RPL17P2-201ENST00000491913 451 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 RN7SL612P-201ENST00000497704 295 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 AC016642.1-202ENST00000509476 641 ntTSL 3 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 AC022784.1-201ENST00000512942 699 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 KC877392.1-201ENST00000524855 426 ntTSL 3 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 AC108136.1-201ENST00000530350 631 ntTSL 5 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 ACER3-213ENST00000533873 929 ntTSL 2 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 MAGOHB-204ENST00000539554 666 ntTSL 3 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 AL445383.1-201ENST00000554689 874 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 LINC01917-201ENST00000565170 1037 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 AC106785.4-201ENST00000569492 412 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 RN7SL270P-201ENST00000579643 281 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 AC011120.1-201ENST00000583916 624 ntTSL 5 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 LINC02028-206ENST00000593326 810 ntTSL 5 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 AL078623.1-201ENST00000602702 907 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 AC091193.1-201ENST00000604640 448 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 C5orf63-208ENST00000607731 478 ntTSL 5 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 AL121830.1-206ENST00000608476 1254 ntTSL 5 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 MUC1-221ENST00000610359 1101 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 AC004241.2-201ENST00000614562 444 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 MUC1-227ENST00000615517 951 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 MRPL57P3-201ENST00000619218 176 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 AC048341.3-201ENST00000619323 491 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 AC018692.2-201ENST00000624130 348 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 MBD5-221ENST00000637159 902 ntTSL 5 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 GTF2H3-201ENST00000228955 1472 ntTSL 2 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 Z95114.1-201ENST00000624264 14574 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 AC087392.3-202ENST00000358446 1754 ntBASIC4.98□□□□□ -1.61
HLA-DMBP28068 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 ZNF24-201ENST00000261332 6307 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HLA-DMBP28068 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC4.98□□□□□ -1.61
HLA-DMBP28068 NEK2P2-201ENST00000438441 1338 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HLA-DMBP28068 GLYATL1P1-201ENST00000528297 1607 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 BTK-209ENST00000618050 2417 ntTSL 5 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HLA-DMBP28068 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC4.97□□□□□ -1.61
HLA-DMBP28068 TTC41P-205ENST00000551270 3963 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 AC079753.1-201ENST00000623243 3868 ntBASIC4.97□□□□□ -1.61
HLA-DMBP28068 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HLA-DMBP28068 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 ASTN2-AS1-201ENST00000418250 1756 ntTSL 2 BASIC4.97□□□□□ -1.61
HLA-DMBP28068 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 84.8 ms