Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC7.88□□□□□ -1.15
COL5A3P25940 AC110716.2-201ENST00000563865 3945 ntBASIC7.88□□□□□ -1.15
COL5A3P25940 GNL2P1-201ENST00000451274 2190 ntBASIC7.88□□□□□ -1.15
COL5A3P25940 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL5A3P25940 AC112719.2-201ENST00000501239 1685 ntTSL 1 (best) BASIC7.88□□□□□ -1.15
COL5A3P25940 LGSN-204ENST00000622415 1612 ntTSL 2 BASIC7.88□□□□□ -1.15
COL5A3P25940 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC7.88□□□□□ -1.15
COL5A3P25940 ZNF69-202ENST00000429654 2010 ntAPPRIS P1 TSL 2 BASIC7.87□□□□□ -1.15
COL5A3P25940 CLDN12-201ENST00000287916 3565 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL5A3P25940 ZNF561-204ENST00000424629 4419 ntTSL 2 BASIC7.87□□□□□ -1.15
COL5A3P25940 USP1-202ENST00000371146 3507 ntAPPRIS P1 TSL 5 BASIC7.87□□□□□ -1.15
COL5A3P25940 MRRF-202ENST00000344641 9826 ntAPPRIS P1 TSL 2 BASIC7.87□□□□□ -1.15
COL5A3P25940 THADA-206ENST00000405006 6310 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL5A3P25940 CREM-208ENST00000361599 2170 ntTSL 5 BASIC7.87□□□□□ -1.15
COL5A3P25940 ZNF791-202ENST00000446165 6412 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL5A3P25940 APOL3-203ENST00000397287 3626 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL5A3P25940 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC7.87□□□□□ -1.15
COL5A3P25940 TMEM202-201ENST00000341689 1012 ntAPPRIS P2 TSL 5 BASIC7.87□□□□□ -1.15
COL5A3P25940 AC127526.2-201ENST00000426436 775 ntBASIC7.87□□□□□ -1.15
COL5A3P25940 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC7.87□□□□□ -1.15
COL5A3P25940 AL139156.3-201ENST00000454802 394 ntBASIC7.87□□□□□ -1.15
COL5A3P25940 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC7.87□□□□□ -1.15
COL5A3P25940 RPS23P6-201ENST00000466136 431 ntBASIC7.87□□□□□ -1.15
COL5A3P25940 SNORA58-201ENST00000505219 137 ntBASIC7.87□□□□□ -1.15
COL5A3P25940 SSX6-203ENST00000509958 336 ntTSL 3 BASIC7.87□□□□□ -1.15
COL5A3P25940 AP001208.1-201ENST00000518612 408 ntTSL 3 BASIC7.87□□□□□ -1.15
COL5A3P25940 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC7.87□□□□□ -1.15
COL5A3P25940 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC7.87□□□□□ -1.15
COL5A3P25940 AC040918.1-201ENST00000560056 632 ntTSL 2 BASIC7.87□□□□□ -1.15
COL5A3P25940 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC7.87□□□□□ -1.15
COL5A3P25940 MRO-208ENST00000588444 866 ntTSL 3 BASIC7.87□□□□□ -1.15
COL5A3P25940 KCNMA1-AS1-204ENST00000595702 504 ntTSL 5 BASIC7.87□□□□□ -1.15
COL5A3P25940 AC005229.3-201ENST00000603438 323 ntBASIC7.87□□□□□ -1.15
COL5A3P25940 AC116631.1-202ENST00000640984 683 ntBASIC7.87□□□□□ -1.15
COL5A3P25940 RUNX1T1-252ENST00000617740 7627 ntAPPRIS P3 TSL 5 BASIC7.87□□□□□ -1.15
COL5A3P25940 Z93929.1-201ENST00000418200 1475 ntBASIC7.87□□□□□ -1.15
COL5A3P25940 KRT39-201ENST00000355612 1696 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL5A3P25940 PHF6-202ENST00000370799 4186 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL5A3P25940 MAPK10-261ENST00000641050 3109 ntBASIC7.87□□□□□ -1.15
COL5A3P25940 ZNF226-213ENST00000588883 5972 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL5A3P25940 NXF2B-204ENST00000618302 2884 ntAPPRIS P1 TSL 2 BASIC7.87□□□□□ -1.15
COL5A3P25940 SLC2A14-203ENST00000431042 3458 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL5A3P25940 AC106872.5-201ENST00000508856 1416 ntBASIC7.87□□□□□ -1.15
COL5A3P25940 ZNF225-201ENST00000262894 4482 ntAPPRIS P1 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL5A3P25940 TANC1-201ENST00000263635 7470 ntAPPRIS P1 TSL 5 BASIC7.87□□□□□ -1.15
COL5A3P25940 ARNT-201ENST00000354396 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL5A3P25940 AC012254.3-201ENST00000591183 2117 ntBASIC7.87□□□□□ -1.15
COL5A3P25940 AC011416.1-201ENST00000514947 1732 ntBASIC7.87□□□□□ -1.15
COL5A3P25940 CSNK1G1-201ENST00000303052 8179 ntAPPRIS P2 TSL 1 (best) BASIC7.87□□□□□ -1.15
COL5A3P25940 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL5A3P25940 AC119674.1-202ENST00000641333 1860 ntBASIC7.87□□□□□ -1.15
COL5A3P25940 ADH1B-205ENST00000625860 4059 ntTSL 1 (best) BASIC7.87□□□□□ -1.15
COL5A3P25940 AC099062.1-202ENST00000640362 3864 ntTSL 5 BASIC7.87□□□□□ -1.15
COL5A3P25940 TATDN2P3-201ENST00000452855 3665 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 RPS3AP2-201ENST00000407190 754 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 RN7SKP293-201ENST00000411389 296 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 FO393401.1-203ENST00000416260 486 ntTSL 5 BASIC7.86□□□□□ -1.15
COL5A3P25940 RPL35AP31-201ENST00000418340 337 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 LINC00390-201ENST00000432331 340 ntTSL 5 BASIC7.86□□□□□ -1.15
COL5A3P25940 AL136982.3-201ENST00000454709 688 ntTSL 3 BASIC7.86□□□□□ -1.15
COL5A3P25940 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC7.86□□□□□ -1.15
COL5A3P25940 RPSAP37-201ENST00000470913 821 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 NPM1P27-201ENST00000502784 830 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC7.86□□□□□ -1.15
COL5A3P25940 SNORA70.20-201ENST00000516848 126 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC7.86□□□□□ -1.15
COL5A3P25940 AL356801.1-201ENST00000559320 294 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC7.86□□□□□ -1.15
COL5A3P25940 AC106037.2-201ENST00000578583 447 ntTSL 5 BASIC7.86□□□□□ -1.15
COL5A3P25940 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC7.86□□□□□ -1.15
COL5A3P25940 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL5A3P25940 AL357562.1-201ENST00000624911 609 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 GPR151-201ENST00000311104 3088 ntAPPRIS P1 BASIC7.86□□□□□ -1.15
COL5A3P25940 FAM186A-203ENST00000543096 2116 ntAPPRIS ALT2 TSL 2 BASIC7.86□□□□□ -1.15
COL5A3P25940 AC123769.1-201ENST00000530992 3192 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL5A3P25940 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL5A3P25940 MEF2C-AS1-214ENST00000514794 2350 ntTSL 4 BASIC7.86□□□□□ -1.15
COL5A3P25940 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL5A3P25940 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC7.86□□□□□ -1.15
COL5A3P25940 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL5A3P25940 RPS2P45-201ENST00000469997 2057 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL5A3P25940 ABCA12-203ENST00000412081 485 ntTSL 2 BASIC7.86□□□□□ -1.15
COL5A3P25940 MARK2P12-201ENST00000420129 585 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 TRIM60P16-201ENST00000444048 694 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC7.86□□□□□ -1.15
COL5A3P25940 AL590399.3-202ENST00000448491 495 ntTSL 5 BASIC7.86□□□□□ -1.15
COL5A3P25940 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC7.86□□□□□ -1.15
COL5A3P25940 AC021074.2-201ENST00000468434 172 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 AC008429.4-201ENST00000521201 182 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 BICD1-206ENST00000551086 423 ntTSL 3 BASIC7.86□□□□□ -1.15
COL5A3P25940 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC7.86□□□□□ -1.15
COL5A3P25940 LAPTM4BP2-201ENST00000604542 446 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 AL645933.2-201ENST00000606743 1207 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 RN7SL787P-201ENST00000613000 284 ntBASIC7.86□□□□□ -1.15
COL5A3P25940 BTN3A3-201ENST00000244519 3002 ntAPPRIS P4 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL5A3P25940 REG1CP-201ENST00000377435 1705 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
COL5A3P25940 FGF10-201ENST00000264664 2193 ntAPPRIS P1 TSL 1 (best) BASIC7.86□□□□□ -1.15
COL5A3P25940 GAS7-204ENST00000437099 8003 ntTSL 1 (best) BASIC7.86□□□□□ -1.15
Retrieved 100 of 98,524 protein–RNA pairs in 73.3 ms