Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC084337.1-201ENST00000524809 686 ntBASIC6.1□□□□□ -1.43
HOXD4P09016 SNRPCP6-201ENST00000528310 210 ntBASIC6.1□□□□□ -1.43
HOXD4P09016 GNG2-203ENST00000553432 577 ntTSL 4 BASIC6.1□□□□□ -1.43
HOXD4P09016 AC067852.5-201ENST00000589299 310 ntBASIC6.1□□□□□ -1.43
HOXD4P09016 AL589740.1-209ENST00000607032 1056 ntTSL 3 BASIC6.1□□□□□ -1.43
HOXD4P09016 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC6.1□□□□□ -1.43
HOXD4P09016 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC6.1□□□□□ -1.43
HOXD4P09016 ASNS-209ENST00000444334 1812 ntTSL 2 BASIC6.1□□□□□ -1.43
HOXD4P09016 CDH18-205ENST00000506372 2432 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HOXD4P09016 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.1□□□□□ -1.43
HOXD4P09016 GYPA-214ENST00000641688 1764 ntAPPRIS ALT2 BASIC6.1□□□□□ -1.43
HOXD4P09016 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HOXD4P09016 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
HOXD4P09016 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC6.1□□□□□ -1.43
HOXD4P09016 IMMTP1-201ENST00000435590 2219 ntBASIC6.1□□□□□ -1.43
HOXD4P09016 FAM13A-AS1-201ENST00000500765 3210 ntTSL 2 BASIC6.1□□□□□ -1.43
HOXD4P09016 ERG-202ENST00000398897 4651 ntTSL 5 BASIC6.1□□□□□ -1.43
HOXD4P09016 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC6.1□□□□□ -1.43
HOXD4P09016 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
HOXD4P09016 CD53-201ENST00000271324 1505 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
HOXD4P09016 AL121949.2-201ENST00000403446 1548 ntBASIC6.09□□□□□ -1.43
HOXD4P09016 STIL-201ENST00000337817 5087 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
HOXD4P09016 ELMO1-202ENST00000396040 1982 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
HOXD4P09016 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
HOXD4P09016 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC6.09□□□□□ -1.43
HOXD4P09016 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
HOXD4P09016 TMED3-202ENST00000424155 16555 ntTSL 3 BASIC6.09□□□□□ -1.43
HOXD4P09016 AC010132.4-201ENST00000569883 1368 ntBASIC6.09□□□□□ -1.43
HOXD4P09016 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC6.09□□□□□ -1.43
HOXD4P09016 EYA3-204ENST00000436342 5943 ntTSL 2 BASIC6.09□□□□□ -1.43
HOXD4P09016 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
HOXD4P09016 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
HOXD4P09016 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
HOXD4P09016 MIR3681HG-201ENST00000412294 2183 ntTSL 2 BASIC6.09□□□□□ -1.43
HOXD4P09016 LACRT-201ENST00000257867 551 ntAPPRIS P2 TSL 1 (best) BASIC6.09□□□□□ -1.43
HOXD4P09016 RNU6-673P-201ENST00000365084 104 ntBASIC6.09□□□□□ -1.43
HOXD4P09016 XAGE5-202ENST00000375501 415 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
HOXD4P09016 MIR199B-201ENST00000384849 110 ntBASIC6.09□□□□□ -1.43
HOXD4P09016 AL353626.3-201ENST00000413399 657 ntBASIC6.09□□□□□ -1.43
HOXD4P09016 AL359382.1-201ENST00000417838 426 ntTSL 5 BASIC6.09□□□□□ -1.43
HOXD4P09016 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC6.09□□□□□ -1.43
HOXD4P09016 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC6.09□□□□□ -1.43
HOXD4P09016 MIR181A2HG-201ENST00000429139 662 ntTSL 2 BASIC6.09□□□□□ -1.43
HOXD4P09016 AC016766.1-201ENST00000429636 714 ntTSL 3 BASIC6.09□□□□□ -1.43
HOXD4P09016 AL645939.3-201ENST00000435408 225 ntBASIC6.09□□□□□ -1.43
HOXD4P09016 UBE2V2P4-201ENST00000447495 259 ntBASIC6.09□□□□□ -1.43
HOXD4P09016 MEF2AP1-201ENST00000454867 863 ntBASIC6.09□□□□□ -1.43
HOXD4P09016 RN7SL170P-201ENST00000487098 295 ntBASIC6.09□□□□□ -1.43
HOXD4P09016 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
HOXD4P09016 AC026826.1-201ENST00000493002 361 ntBASIC6.09□□□□□ -1.43
HOXD4P09016 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC6.09□□□□□ -1.43
HOXD4P09016 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC6.09□□□□□ -1.43
HOXD4P09016 AC239584.1-201ENST00000510419 732 ntTSL 5 BASIC6.09□□□□□ -1.43
HOXD4P09016 Vault.2-201ENST00000516519 98 ntBASIC6.09□□□□□ -1.43
HOXD4P09016 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC6.09□□□□□ -1.43
HOXD4P09016 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC6.09□□□□□ -1.43
HOXD4P09016 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC6.09□□□□□ -1.43
HOXD4P09016 OR9G2P-201ENST00000533326 880 ntBASIC6.09□□□□□ -1.43
HOXD4P09016 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC6.09□□□□□ -1.43
HOXD4P09016 AL135838.1-201ENST00000556080 235 ntTSL 3 BASIC6.09□□□□□ -1.43
HOXD4P09016 ANP32BP1-202ENST00000568553 737 ntBASIC6.09□□□□□ -1.43
HOXD4P09016 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC6.09□□□□□ -1.43
HOXD4P09016 RN7SL270P-201ENST00000579643 281 ntBASIC6.09□□□□□ -1.43
HOXD4P09016 Metazoa_SRP.202-201ENST00000585071 281 ntBASIC6.09□□□□□ -1.43
HOXD4P09016 AC015911.2-201ENST00000585536 396 ntTSL 3 BASIC6.09□□□□□ -1.43
HOXD4P09016 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC6.09□□□□□ -1.43
HOXD4P09016 AC137695.1-201ENST00000604126 489 ntBASIC6.09□□□□□ -1.43
HOXD4P09016 AC073593.1-201ENST00000624500 411 ntBASIC6.09□□□□□ -1.43
HOXD4P09016 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
HOXD4P09016 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
HOXD4P09016 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC6.09□□□□□ -1.43
HOXD4P09016 L3MBTL3-209ENST00000533560 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
HOXD4P09016 DTNA-201ENST00000269192 1964 ntTSL 2 BASIC6.09□□□□□ -1.43
HOXD4P09016 MEPE-201ENST00000361056 1986 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.43
HOXD4P09016 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
HOXD4P09016 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.43
HOXD4P09016 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
HOXD4P09016 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC6.09□□□□□ -1.44
HOXD4P09016 SDAD1-201ENST00000356260 3017 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
HOXD4P09016 PRKAR1A-204ENST00000536854 3697 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
HOXD4P09016 EZH1-222ENST00000592743 2501 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
HOXD4P09016 ARHGAP29-201ENST00000260526 6087 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HOXD4P09016 VDAC2-214ENST00000543351 1424 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
HOXD4P09016 CREB5-201ENST00000357727 8532 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
HOXD4P09016 DCC-215ENST00000581580 3517 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HOXD4P09016 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC6.08□□□□□ -1.44
HOXD4P09016 UGT2B15-201ENST00000338206 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HOXD4P09016 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC6.08□□□□□ -1.44
HOXD4P09016 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HOXD4P09016 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC6.08□□□□□ -1.44
HOXD4P09016 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HOXD4P09016 AC083837.1-201ENST00000565297 2994 ntBASIC6.08□□□□□ -1.44
HOXD4P09016 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
HOXD4P09016 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC6.08□□□□□ -1.44
HOXD4P09016 HOXD8-202ENST00000429017 1608 ntTSL 2 BASIC6.08□□□□□ -1.44
HOXD4P09016 TPRG1-204ENST00000433971 2296 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
HOXD4P09016 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC6.08□□□□□ -1.44
HOXD4P09016 GRPR-201ENST00000380289 1929 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
HOXD4P09016 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
HOXD4P09016 BPIFA2-201ENST00000253362 1122 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 80 ms