Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 LINC00907-201ENST00000585627 3324 ntTSL 1 (best) BASIC7.39□□□□□ -1.23
CIITAP33076 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC7.39□□□□□ -1.23
CIITAP33076 ZNF83-205ENST00000594682 2890 ntTSL 4 BASIC7.39□□□□□ -1.23
CIITAP33076 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CIITAP33076 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC7.39□□□□□ -1.23
CIITAP33076 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CIITAP33076 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC7.39□□□□□ -1.23
CIITAP33076 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC7.38□□□□□ -1.23
CIITAP33076 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CIITAP33076 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC7.38□□□□□ -1.23
CIITAP33076 CTNNA1P1-201ENST00000515849 2728 ntBASIC7.38□□□□□ -1.23
CIITAP33076 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CIITAP33076 AC010168.2-201ENST00000562691 5428 ntBASIC7.38□□□□□ -1.23
CIITAP33076 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CIITAP33076 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CIITAP33076 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CIITAP33076 SPANXN5-201ENST00000375511 1316 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CIITAP33076 SATL1-201ENST00000395409 2192 ntAPPRIS P1 TSL 5 BASIC7.38□□□□□ -1.23
CIITAP33076 SCGB1D4-201ENST00000358585 439 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CIITAP33076 RNA5SP188-201ENST00000362916 129 ntBASIC7.38□□□□□ -1.23
CIITAP33076 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC7.38□□□□□ -1.23
CIITAP33076 IGHV6-1-201ENST00000390593 415 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
CIITAP33076 AL391419.1-201ENST00000398901 1275 ntBASIC7.38□□□□□ -1.23
CIITAP33076 AL023284.3-201ENST00000407767 334 ntBASIC7.38□□□□□ -1.23
CIITAP33076 AC104823.1-201ENST00000413290 989 ntTSL 2 BASIC7.38□□□□□ -1.23
CIITAP33076 RPL7AP51-201ENST00000422016 760 ntBASIC7.38□□□□□ -1.23
CIITAP33076 AL139415.1-201ENST00000424862 352 ntBASIC7.38□□□□□ -1.23
CIITAP33076 C4orf45-201ENST00000434826 1215 ntAPPRIS P1 TSL 2 BASIC7.38□□□□□ -1.23
CIITAP33076 AL133247.1-201ENST00000435713 646 ntTSL 3 BASIC7.38□□□□□ -1.23
CIITAP33076 AL021937.4-201ENST00000444848 444 ntTSL 3 BASIC7.38□□□□□ -1.23
CIITAP33076 AC098818.1-201ENST00000478593 252 ntBASIC7.38□□□□□ -1.23
CIITAP33076 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC7.38□□□□□ -1.23
CIITAP33076 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC7.38□□□□□ -1.23
CIITAP33076 AC068721.1-201ENST00000507156 583 ntTSL 5 BASIC7.38□□□□□ -1.23
CIITAP33076 AC010609.1-201ENST00000519375 569 ntTSL 3 BASIC7.38□□□□□ -1.23
CIITAP33076 AC116917.1-201ENST00000520558 305 ntBASIC7.38□□□□□ -1.23
CIITAP33076 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC7.38□□□□□ -1.23
CIITAP33076 IGLV3-6-201ENST00000523937 250 ntBASIC7.38□□□□□ -1.23
CIITAP33076 EIF4EP5-201ENST00000528228 640 ntBASIC7.38□□□□□ -1.23
CIITAP33076 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC7.38□□□□□ -1.23
CIITAP33076 NPIPA8-202ENST00000541810 1131 ntAPPRIS P1 TSL 5 BASIC7.38□□□□□ -1.23
CIITAP33076 NPIPA3-203ENST00000552140 1053 ntTSL 5 BASIC7.38□□□□□ -1.23
CIITAP33076 NPIPA2-203ENST00000553201 1053 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CIITAP33076 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC7.38□□□□□ -1.23
CIITAP33076 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC7.38□□□□□ -1.23
CIITAP33076 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CIITAP33076 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC7.38□□□□□ -1.23
CIITAP33076 AC026898.1-201ENST00000586404 571 ntBASIC7.38□□□□□ -1.23
CIITAP33076 LINC01862-201ENST00000593792 478 ntTSL 2 BASIC7.38□□□□□ -1.23
CIITAP33076 AC004160.1-210ENST00000599875 689 ntTSL 5 BASIC7.38□□□□□ -1.23
CIITAP33076 LIPF-205ENST00000608620 1290 ntTSL 2 BASIC7.38□□□□□ -1.23
CIITAP33076 SNHG5-219ENST00000623910 631 ntTSL 2 BASIC7.38□□□□□ -1.23
CIITAP33076 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CIITAP33076 NLRP13-202ENST00000588751 3533 ntAPPRIS ALT2 TSL 5 BASIC7.38□□□□□ -1.23
CIITAP33076 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC7.38□□□□□ -1.23
CIITAP33076 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CIITAP33076 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CIITAP33076 PDE4DIP-204ENST00000369351 4922 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CIITAP33076 ZNF566-202ENST00000424129 2644 ntAPPRIS P3 TSL 2 BASIC7.38□□□□□ -1.23
CIITAP33076 AC087477.2-202ENST00000558499 4856 ntTSL 4 BASIC7.38□□□□□ -1.23
CIITAP33076 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CIITAP33076 TMC1-201ENST00000297784 3201 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CIITAP33076 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC7.38□□□□□ -1.23
CIITAP33076 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC7.38□□□□□ -1.23
CIITAP33076 DTNA-228ENST00000597674 1732 ntTSL 1 (best) BASIC7.38□□□□□ -1.23
CIITAP33076 KAT6A-202ENST00000396930 9285 ntAPPRIS P3 TSL 5 BASIC7.38□□□□□ -1.23
CIITAP33076 AC062029.1-202ENST00000606164 3651 ntBASIC7.38□□□□□ -1.23
CIITAP33076 NXF4-201ENST00000360035 3617 ntTSL 2 BASIC7.38□□□□□ -1.23
CIITAP33076 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC7.38□□□□□ -1.23
CIITAP33076 HPS5-205ENST00000438420 4147 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CIITAP33076 BRCA1-210ENST00000471181 5936 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CIITAP33076 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CIITAP33076 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CIITAP33076 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CIITAP33076 AP2B1-215ENST00000616681 3267 ntTSL 2 BASIC7.37□□□□□ -1.23
CIITAP33076 IL31RA-201ENST00000297015 2695 ntAPPRIS ALT2 TSL 5 BASIC7.37□□□□□ -1.23
CIITAP33076 AC010401.2-201ENST00000575137 4934 ntBASIC7.37□□□□□ -1.23
CIITAP33076 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CIITAP33076 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CIITAP33076 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC7.37□□□□□ -1.23
CIITAP33076 ANKRD17-203ENST00000509867 8105 ntAPPRIS ALT2 TSL 1 (best) BASIC7.37□□□□□ -1.23
CIITAP33076 SMC1A-201ENST00000322213 9784 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CIITAP33076 USP16-201ENST00000334352 3004 ntAPPRIS P3 TSL 5 BASIC7.37□□□□□ -1.23
CIITAP33076 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CIITAP33076 AC023245.2-201ENST00000530760 2978 ntBASIC7.37□□□□□ -1.23
CIITAP33076 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC7.37□□□□□ -1.23
CIITAP33076 AC025809.2-201ENST00000625085 1802 ntBASIC7.37□□□□□ -1.23
CIITAP33076 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CIITAP33076 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC7.37□□□□□ -1.23
CIITAP33076 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC7.37□□□□□ -1.23
CIITAP33076 AC245036.1-201ENST00000391727 309 ntBASIC7.37□□□□□ -1.23
CIITAP33076 TOMM6-202ENST00000398884 637 ntAPPRIS P1 TSL 1 (best) BASIC7.37□□□□□ -1.23
CIITAP33076 AKR1D1-203ENST00000432161 1236 ntTSL 2 BASIC7.37□□□□□ -1.23
CIITAP33076 E2F3-IT1-201ENST00000433182 400 ntTSL 3 BASIC7.37□□□□□ -1.23
CIITAP33076 AC003989.1-201ENST00000434569 565 ntBASIC7.37□□□□□ -1.23
CIITAP33076 LINC00328-2P-201ENST00000436585 219 ntBASIC7.37□□□□□ -1.23
CIITAP33076 LINC02384-202ENST00000441255 567 ntTSL 4 BASIC7.37□□□□□ -1.23
CIITAP33076 AC092824.1-201ENST00000483524 576 ntBASIC7.37□□□□□ -1.23
CIITAP33076 AC078785.1-205ENST00000491578 482 ntTSL 4 BASIC7.37□□□□□ -1.23
CIITAP33076 AC097103.2-205ENST00000515247 567 ntTSL 4 BASIC7.37□□□□□ -1.23
Retrieved 100 of 98,524 protein–RNA pairs in 425.4 ms