Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 GOLGA2P11-201ENST00000562660 1621 ntBASIC18.79■□□□□ 0.6
ATG4BQ9Y4P1 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC18.79■□□□□ 0.6
ATG4BQ9Y4P1 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.79■□□□□ 0.6
ATG4BQ9Y4P1 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
ATG4BQ9Y4P1 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATG4BQ9Y4P1 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
ATG4BQ9Y4P1 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC18.79■□□□□ 0.6
ATG4BQ9Y4P1 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.79■□□□□ 0.6
ATG4BQ9Y4P1 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 NFE2L1-204ENST00000536222 2172 ntTSL 2 BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 TMEM179-206ENST00000616017 1645 ntBASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 PHGDH-210ENST00000641115 1638 ntBASIC18.78■□□□□ 0.6
ATG4BQ9Y4P1 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
ATG4BQ9Y4P1 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATG4BQ9Y4P1 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
ATG4BQ9Y4P1 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
ATG4BQ9Y4P1 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
ATG4BQ9Y4P1 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.77■□□□□ 0.6
ATG4BQ9Y4P1 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.77■□□□□ 0.6
ATG4BQ9Y4P1 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.6
ATG4BQ9Y4P1 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.77■□□□□ 0.6
ATG4BQ9Y4P1 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC18.77■□□□□ 0.6
ATG4BQ9Y4P1 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATG4BQ9Y4P1 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
ATG4BQ9Y4P1 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC18.77■□□□□ 0.6
ATG4BQ9Y4P1 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC18.77■□□□□ 0.6
ATG4BQ9Y4P1 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATG4BQ9Y4P1 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
ATG4BQ9Y4P1 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
ATG4BQ9Y4P1 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.59
ATG4BQ9Y4P1 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4BQ9Y4P1 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4BQ9Y4P1 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4BQ9Y4P1 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4BQ9Y4P1 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC18.76■□□□□ 0.59
ATG4BQ9Y4P1 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.76■□□□□ 0.59
ATG4BQ9Y4P1 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4BQ9Y4P1 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
ATG4BQ9Y4P1 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4BQ9Y4P1 SOX15-203ENST00000570788 1093 ntBASIC18.76■□□□□ 0.59
ATG4BQ9Y4P1 AC124283.5-201ENST00000624661 1809 ntBASIC18.76■□□□□ 0.59
ATG4BQ9Y4P1 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.76■□□□□ 0.59
ATG4BQ9Y4P1 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC18.76■□□□□ 0.59
ATG4BQ9Y4P1 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
ATG4BQ9Y4P1 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 AC125437.2-201ENST00000625180 2167 ntBASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 CCDC62-204ENST00000392441 2936 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 RNA5SP413-201ENST00000516373 109 ntBASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
ATG4BQ9Y4P1 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 AC009237.14-201ENST00000609975 1594 ntBASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
ATG4BQ9Y4P1 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms