Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC21.28■■□□□ 1
SIX4Q9UIU6 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC21.28■■□□□ 1
SIX4Q9UIU6 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.28■■□□□ 1
SIX4Q9UIU6 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.28■■□□□ 1
SIX4Q9UIU6 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
SIX4Q9UIU6 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.28■■□□□ 1
SIX4Q9UIU6 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC21.28■■□□□ 1
SIX4Q9UIU6 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC21.28■■□□□ 1
SIX4Q9UIU6 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
SIX4Q9UIU6 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC21.28■■□□□ 1
SIX4Q9UIU6 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC21.28■■□□□ 1
SIX4Q9UIU6 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC21.28■■□□□ 1
SIX4Q9UIU6 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SIX4Q9UIU6 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC21.27■■□□□ 1
SIX4Q9UIU6 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SIX4Q9UIU6 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC21.27■■□□□ 1
SIX4Q9UIU6 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
SIX4Q9UIU6 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
SIX4Q9UIU6 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.27■■□□□ 1
SIX4Q9UIU6 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC21.27■■□□□ 1
SIX4Q9UIU6 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.27■■□□□ 1
SIX4Q9UIU6 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC21.27■■□□□ 1
SIX4Q9UIU6 F2R-202ENST00000505600 442 ntTSL 2 BASIC21.27■■□□□ 1
SIX4Q9UIU6 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC21.27■■□□□ 1
SIX4Q9UIU6 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.27■■□□□ 1
SIX4Q9UIU6 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC21.27■■□□□ 1
SIX4Q9UIU6 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC21.27■■□□□ 1
SIX4Q9UIU6 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SIX4Q9UIU6 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
SIX4Q9UIU6 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC21.27■□□□□ 0.99
SIX4Q9UIU6 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC21.26■□□□□ 0.99
SIX4Q9UIU6 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 PRKY-204ENST00000533551 1019 ntBASIC21.26■□□□□ 0.99
SIX4Q9UIU6 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
SIX4Q9UIU6 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 RHOD-202ENST00000532559 538 ntTSL 3 BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 GOLGA2P11-201ENST00000562660 1621 ntBASIC21.25■□□□□ 0.99
SIX4Q9UIU6 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
SIX4Q9UIU6 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 NBPF21P-201ENST00000425093 1451 ntBASIC21.24■□□□□ 0.99
SIX4Q9UIU6 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC21.24■□□□□ 0.99
SIX4Q9UIU6 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
SIX4Q9UIU6 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 31.7 ms