Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC20.49■□□□□ 0.87
TDP1Q9NUW8 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TDP1Q9NUW8 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
TDP1Q9NUW8 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.49■□□□□ 0.87
TDP1Q9NUW8 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TDP1Q9NUW8 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
TDP1Q9NUW8 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TDP1Q9NUW8 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TDP1Q9NUW8 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
TDP1Q9NUW8 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
TDP1Q9NUW8 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC20.48■□□□□ 0.87
TDP1Q9NUW8 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TDP1Q9NUW8 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
TDP1Q9NUW8 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
TDP1Q9NUW8 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TDP1Q9NUW8 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
TDP1Q9NUW8 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TDP1Q9NUW8 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
TDP1Q9NUW8 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.48■□□□□ 0.87
TDP1Q9NUW8 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.48■□□□□ 0.87
TDP1Q9NUW8 YBX1P10-201ENST00000444752 975 ntBASIC20.48■□□□□ 0.87
TDP1Q9NUW8 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.48■□□□□ 0.87
TDP1Q9NUW8 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.48■□□□□ 0.87
TDP1Q9NUW8 C1QL1P1-201ENST00000568105 661 ntBASIC20.48■□□□□ 0.87
TDP1Q9NUW8 AP000525.1-201ENST00000608286 694 ntBASIC20.48■□□□□ 0.87
TDP1Q9NUW8 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC20.48■□□□□ 0.87
TDP1Q9NUW8 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.48■□□□□ 0.87
TDP1Q9NUW8 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.48■□□□□ 0.87
TDP1Q9NUW8 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.48■□□□□ 0.87
TDP1Q9NUW8 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
TDP1Q9NUW8 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 PPOX-219ENST00000544598 813 ntTSL 2 BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
TDP1Q9NUW8 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
TDP1Q9NUW8 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
TDP1Q9NUW8 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TDP1Q9NUW8 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
TDP1Q9NUW8 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.46■□□□□ 0.87
TDP1Q9NUW8 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.46■□□□□ 0.87
TDP1Q9NUW8 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC20.46■□□□□ 0.87
TDP1Q9NUW8 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC20.46■□□□□ 0.87
TDP1Q9NUW8 AC010331.1-201ENST00000611423 582 ntBASIC20.46■□□□□ 0.87
TDP1Q9NUW8 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
TDP1Q9NUW8 GLDC-219ENST00000640208 420 ntTSL 2 BASIC20.46■□□□□ 0.87
TDP1Q9NUW8 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
TDP1Q9NUW8 PHGDH-210ENST00000641115 1638 ntBASIC20.45■□□□□ 0.87
TDP1Q9NUW8 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TDP1Q9NUW8 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
TDP1Q9NUW8 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
TDP1Q9NUW8 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TDP1Q9NUW8 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TDP1Q9NUW8 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
TDP1Q9NUW8 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TDP1Q9NUW8 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC20.45■□□□□ 0.86
TDP1Q9NUW8 RCN1P1-201ENST00000400413 996 ntBASIC20.45■□□□□ 0.86
TDP1Q9NUW8 MIR1238-201ENST00000408483 83 ntBASIC20.45■□□□□ 0.86
TDP1Q9NUW8 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.45■□□□□ 0.86
TDP1Q9NUW8 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.45■□□□□ 0.86
TDP1Q9NUW8 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TDP1Q9NUW8 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.45■□□□□ 0.86
TDP1Q9NUW8 AL031985.4-201ENST00000642138 673 ntBASIC20.45■□□□□ 0.86
TDP1Q9NUW8 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC20.45■□□□□ 0.86
TDP1Q9NUW8 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TDP1Q9NUW8 SMG8-203ENST00000578922 2178 ntBASIC20.45■□□□□ 0.86
TDP1Q9NUW8 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
TDP1Q9NUW8 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 KRT18P16-201ENST00000510337 1294 ntBASIC20.44■□□□□ 0.86
TDP1Q9NUW8 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
TDP1Q9NUW8 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 21.4 ms