Protein–RNA interactions for Protein: Q9NSU2

TREX1, Three-prime repair exonuclease 1, humanhuman

Predictions only

Length 369 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TREX1Q9NSU2 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TREX1Q9NSU2 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TREX1Q9NSU2 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TREX1Q9NSU2 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
TREX1Q9NSU2 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.82■□□□□ 0.76
TREX1Q9NSU2 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 AC116562.4-201ENST00000641316 2276 ntBASIC19.81■□□□□ 0.76
TREX1Q9NSU2 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 RHEB-204ENST00000472642 900 ntTSL 3 BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 ZNF12-201ENST00000342651 2921 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 ANKRD13D-216ENST00000514166 2138 ntTSL 2 BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
TREX1Q9NSU2 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 AC116351.2-201ENST00000606540 1585 ntBASIC19.8■□□□□ 0.76
TREX1Q9NSU2 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 GGT1-206ENST00000404223 952 ntTSL 2 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 AL138781.1-201ENST00000566567 1274 ntBASIC19.8■□□□□ 0.76
TREX1Q9NSU2 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
TREX1Q9NSU2 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 AC018553.1-201ENST00000616682 1458 ntBASIC19.79■□□□□ 0.76
TREX1Q9NSU2 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 ST3GAL4-217ENST00000534083 1919 ntAPPRIS ALT1 TSL 5 BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 AC098934.4-201ENST00000564127 592 ntBASIC19.79■□□□□ 0.76
TREX1Q9NSU2 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
TREX1Q9NSU2 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.78■□□□□ 0.76
TREX1Q9NSU2 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC19.78■□□□□ 0.76
TREX1Q9NSU2 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
TREX1Q9NSU2 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TREX1Q9NSU2 ZDHHC24-203ENST00000526986 1424 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TREX1Q9NSU2 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TREX1Q9NSU2 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
TREX1Q9NSU2 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
TREX1Q9NSU2 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
TREX1Q9NSU2 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC19.78■□□□□ 0.76
TREX1Q9NSU2 AL390719.1-204ENST00000412397 1219 ntBASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms