Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC22.29■■□□□ 1.16
VTA1Q9NP79 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
VTA1Q9NP79 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VTA1Q9NP79 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
VTA1Q9NP79 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
VTA1Q9NP79 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
VTA1Q9NP79 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VTA1Q9NP79 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC22.28■■□□□ 1.16
VTA1Q9NP79 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC22.28■■□□□ 1.16
VTA1Q9NP79 PCGF3-208ENST00000470161 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VTA1Q9NP79 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC22.28■■□□□ 1.16
VTA1Q9NP79 MESTP1-201ENST00000404287 994 ntBASIC22.28■■□□□ 1.16
VTA1Q9NP79 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC22.28■■□□□ 1.16
VTA1Q9NP79 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC22.28■■□□□ 1.16
VTA1Q9NP79 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC22.28■■□□□ 1.16
VTA1Q9NP79 AC026310.3-201ENST00000625186 2373 ntBASIC22.28■■□□□ 1.16
VTA1Q9NP79 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VTA1Q9NP79 KRT18P22-201ENST00000402024 1347 ntBASIC22.28■■□□□ 1.16
VTA1Q9NP79 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
VTA1Q9NP79 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
VTA1Q9NP79 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
VTA1Q9NP79 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC22.28■■□□□ 1.16
VTA1Q9NP79 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC22.28■■□□□ 1.16
VTA1Q9NP79 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
VTA1Q9NP79 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
VTA1Q9NP79 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC22.27■■□□□ 1.16
VTA1Q9NP79 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
VTA1Q9NP79 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC22.27■■□□□ 1.16
VTA1Q9NP79 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
VTA1Q9NP79 AC113347.1-201ENST00000413321 391 ntBASIC22.27■■□□□ 1.16
VTA1Q9NP79 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC22.27■■□□□ 1.16
VTA1Q9NP79 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC22.27■■□□□ 1.16
VTA1Q9NP79 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC22.27■■□□□ 1.16
VTA1Q9NP79 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC22.27■■□□□ 1.16
VTA1Q9NP79 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC22.27■■□□□ 1.16
VTA1Q9NP79 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
VTA1Q9NP79 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC22.27■■□□□ 1.16
VTA1Q9NP79 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC22.27■■□□□ 1.16
VTA1Q9NP79 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC22.27■■□□□ 1.16
VTA1Q9NP79 ABBA01031674.1-201ENST00000635145 728 ntBASIC22.27■■□□□ 1.16
VTA1Q9NP79 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
VTA1Q9NP79 PHGDH-210ENST00000641115 1638 ntBASIC22.27■■□□□ 1.16
VTA1Q9NP79 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
VTA1Q9NP79 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
VTA1Q9NP79 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
VTA1Q9NP79 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC22.26■■□□□ 1.15
VTA1Q9NP79 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
VTA1Q9NP79 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
VTA1Q9NP79 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC22.26■■□□□ 1.15
VTA1Q9NP79 AC005521.1-201ENST00000393351 872 ntBASIC22.26■■□□□ 1.15
VTA1Q9NP79 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC22.26■■□□□ 1.15
VTA1Q9NP79 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC22.26■■□□□ 1.15
VTA1Q9NP79 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC22.26■■□□□ 1.15
VTA1Q9NP79 DUT-205ENST00000558813 769 ntTSL 2 BASIC22.26■■□□□ 1.15
VTA1Q9NP79 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC22.26■■□□□ 1.15
VTA1Q9NP79 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC22.26■■□□□ 1.15
VTA1Q9NP79 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
VTA1Q9NP79 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC22.26■■□□□ 1.15
VTA1Q9NP79 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC22.26■■□□□ 1.15
VTA1Q9NP79 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC22.25■■□□□ 1.15
VTA1Q9NP79 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VTA1Q9NP79 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
VTA1Q9NP79 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VTA1Q9NP79 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
VTA1Q9NP79 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
VTA1Q9NP79 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC22.25■■□□□ 1.15
VTA1Q9NP79 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC22.25■■□□□ 1.15
VTA1Q9NP79 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VTA1Q9NP79 CRAT-202ENST00000393384 973 ntTSL 2 BASIC22.25■■□□□ 1.15
VTA1Q9NP79 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC22.25■■□□□ 1.15
VTA1Q9NP79 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC22.25■■□□□ 1.15
VTA1Q9NP79 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VTA1Q9NP79 GRAMD4P8-201ENST00000605465 1115 ntBASIC22.25■■□□□ 1.15
VTA1Q9NP79 DGCR10-201ENST00000609839 495 ntBASIC22.25■■□□□ 1.15
VTA1Q9NP79 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
VTA1Q9NP79 GOLGA6L3-201ENST00000507199 1679 ntBASIC22.25■■□□□ 1.15
VTA1Q9NP79 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC22.25■■□□□ 1.15
VTA1Q9NP79 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
VTA1Q9NP79 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
VTA1Q9NP79 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
VTA1Q9NP79 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
VTA1Q9NP79 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
VTA1Q9NP79 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
VTA1Q9NP79 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC22.25■■□□□ 1.15
VTA1Q9NP79 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
VTA1Q9NP79 WWC2-AS2-201ENST00000578387 2183 ntBASIC22.24■■□□□ 1.15
VTA1Q9NP79 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC22.24■■□□□ 1.15
VTA1Q9NP79 AC004980.1-204ENST00000429707 299 ntBASIC22.24■■□□□ 1.15
VTA1Q9NP79 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC22.24■■□□□ 1.15
VTA1Q9NP79 B3GAT3P1-201ENST00000471720 806 ntBASIC22.24■■□□□ 1.15
VTA1Q9NP79 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC22.24■■□□□ 1.15
VTA1Q9NP79 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
VTA1Q9NP79 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
VTA1Q9NP79 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC22.24■■□□□ 1.15
VTA1Q9NP79 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC22.24■■□□□ 1.15
VTA1Q9NP79 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
VTA1Q9NP79 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC22.23■■□□□ 1.15
VTA1Q9NP79 PTCRA-201ENST00000304672 1080 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
VTA1Q9NP79 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC22.23■■□□□ 1.15
VTA1Q9NP79 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms