Protein–RNA interactions for Protein: Q9H0E7

USP44, Ubiquitin carboxyl-terminal hydrolase 44, humanhuman

Predictions only

Length 712 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP44Q9H0E7 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
USP44Q9H0E7 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC24.86■■□□□ 1.57
USP44Q9H0E7 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC24.86■■□□□ 1.57
USP44Q9H0E7 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC24.86■■□□□ 1.57
USP44Q9H0E7 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC24.85■■□□□ 1.57
USP44Q9H0E7 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
USP44Q9H0E7 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC24.85■■□□□ 1.57
USP44Q9H0E7 AC239809.2-201ENST00000415381 517 ntBASIC24.85■■□□□ 1.57
USP44Q9H0E7 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
USP44Q9H0E7 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
USP44Q9H0E7 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC24.85■■□□□ 1.57
USP44Q9H0E7 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC24.85■■□□□ 1.57
USP44Q9H0E7 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC24.85■■□□□ 1.57
USP44Q9H0E7 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC24.85■■□□□ 1.57
USP44Q9H0E7 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC24.85■■□□□ 1.57
USP44Q9H0E7 RHOD-202ENST00000532559 538 ntTSL 3 BASIC24.85■■□□□ 1.57
USP44Q9H0E7 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC24.85■■□□□ 1.57
USP44Q9H0E7 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
USP44Q9H0E7 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
USP44Q9H0E7 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
USP44Q9H0E7 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC24.85■■□□□ 1.57
USP44Q9H0E7 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC24.85■■□□□ 1.57
USP44Q9H0E7 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC24.85■■□□□ 1.57
USP44Q9H0E7 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC24.84■■□□□ 1.57
USP44Q9H0E7 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
USP44Q9H0E7 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC24.84■■□□□ 1.57
USP44Q9H0E7 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC24.84■■□□□ 1.57
USP44Q9H0E7 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC24.84■■□□□ 1.57
USP44Q9H0E7 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC24.84■■□□□ 1.57
USP44Q9H0E7 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC24.84■■□□□ 1.57
USP44Q9H0E7 AC066615.1-201ENST00000640911 628 ntBASIC24.84■■□□□ 1.57
USP44Q9H0E7 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC24.84■■□□□ 1.57
USP44Q9H0E7 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC24.84■■□□□ 1.57
USP44Q9H0E7 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.57
USP44Q9H0E7 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC24.83■■□□□ 1.57
USP44Q9H0E7 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC24.83■■□□□ 1.57
USP44Q9H0E7 TK2-204ENST00000525974 1178 ntTSL 2 BASIC24.83■■□□□ 1.57
USP44Q9H0E7 PRKY-204ENST00000533551 1019 ntBASIC24.83■■□□□ 1.57
USP44Q9H0E7 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC24.83■■□□□ 1.57
USP44Q9H0E7 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC24.83■■□□□ 1.57
USP44Q9H0E7 AC110285.5-201ENST00000611501 352 ntBASIC24.83■■□□□ 1.57
USP44Q9H0E7 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC24.83■■□□□ 1.57
USP44Q9H0E7 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC24.83■■□□□ 1.57
USP44Q9H0E7 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.57
USP44Q9H0E7 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.57
USP44Q9H0E7 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
USP44Q9H0E7 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC24.83■■□□□ 1.56
USP44Q9H0E7 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
USP44Q9H0E7 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC24.82■■□□□ 1.56
USP44Q9H0E7 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
USP44Q9H0E7 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
USP44Q9H0E7 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
USP44Q9H0E7 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
USP44Q9H0E7 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC24.82■■□□□ 1.56
USP44Q9H0E7 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
USP44Q9H0E7 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
USP44Q9H0E7 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC24.82■■□□□ 1.56
USP44Q9H0E7 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
USP44Q9H0E7 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC24.82■■□□□ 1.56
USP44Q9H0E7 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC24.82■■□□□ 1.56
USP44Q9H0E7 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC24.82■■□□□ 1.56
USP44Q9H0E7 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
USP44Q9H0E7 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC24.82■■□□□ 1.56
USP44Q9H0E7 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC24.82■■□□□ 1.56
USP44Q9H0E7 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC24.82■■□□□ 1.56
USP44Q9H0E7 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC24.82■■□□□ 1.56
USP44Q9H0E7 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC24.82■■□□□ 1.56
USP44Q9H0E7 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC24.82■■□□□ 1.56
USP44Q9H0E7 NBPF21P-201ENST00000425093 1451 ntBASIC24.82■■□□□ 1.56
USP44Q9H0E7 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC24.82■■□□□ 1.56
USP44Q9H0E7 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC24.82■■□□□ 1.56
USP44Q9H0E7 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
USP44Q9H0E7 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
USP44Q9H0E7 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
USP44Q9H0E7 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
USP44Q9H0E7 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
USP44Q9H0E7 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
USP44Q9H0E7 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC24.81■■□□□ 1.56
USP44Q9H0E7 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC24.81■■□□□ 1.56
USP44Q9H0E7 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC24.81■■□□□ 1.56
USP44Q9H0E7 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC24.81■■□□□ 1.56
USP44Q9H0E7 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC24.81■■□□□ 1.56
USP44Q9H0E7 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
USP44Q9H0E7 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
USP44Q9H0E7 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC24.81■■□□□ 1.56
USP44Q9H0E7 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
USP44Q9H0E7 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
USP44Q9H0E7 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
USP44Q9H0E7 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
USP44Q9H0E7 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC24.81■■□□□ 1.56
USP44Q9H0E7 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC24.81■■□□□ 1.56
USP44Q9H0E7 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC24.81■■□□□ 1.56
USP44Q9H0E7 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC24.81■■□□□ 1.56
USP44Q9H0E7 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
USP44Q9H0E7 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
USP44Q9H0E7 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
USP44Q9H0E7 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC24.8■■□□□ 1.56
USP44Q9H0E7 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
USP44Q9H0E7 UBE2SP1-201ENST00000450587 669 ntBASIC24.8■■□□□ 1.56
USP44Q9H0E7 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC24.8■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms