Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC20.3■□□□□ 0.84
COL25A1Q9BXS0 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC20.3■□□□□ 0.84
COL25A1Q9BXS0 AC073648.2-201ENST00000510116 352 ntBASIC20.3■□□□□ 0.84
COL25A1Q9BXS0 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC20.3■□□□□ 0.84
COL25A1Q9BXS0 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL25A1Q9BXS0 RPS15-207ENST00000591032 550 ntTSL 3 BASIC20.3■□□□□ 0.84
COL25A1Q9BXS0 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.3■□□□□ 0.84
COL25A1Q9BXS0 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL25A1Q9BXS0 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL25A1Q9BXS0 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
COL25A1Q9BXS0 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 AC137767.1-201ENST00000602918 1920 ntBASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 CALY-203ENST00000368558 825 ntTSL 5 BASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 AL035633.1-201ENST00000406139 838 ntBASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 RPS8P6-201ENST00000426177 609 ntBASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 PPIE-208ENST00000470213 927 ntTSL 3 BASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 ABBA01031661.1-201ENST00000634362 1253 ntBASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
COL25A1Q9BXS0 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 AP002770.1-201ENST00000540547 428 ntTSL 4 BASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 SART3-203ENST00000546611 1184 ntBASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC20.28■□□□□ 0.84
COL25A1Q9BXS0 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 AC093901.1-201ENST00000414886 778 ntTSL 5 BASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 RNPS1P1-201ENST00000507437 918 ntBASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 CNTD2-203ENST00000513948 787 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 AP000867.3-201ENST00000524675 377 ntBASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL25A1Q9BXS0 NHLRC4-201ENST00000424439 2097 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 AC064862.7-201ENST00000604520 867 ntBASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 AC112497.1-201ENST00000624824 639 ntBASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL25A1Q9BXS0 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC20.25■□□□□ 0.83
COL25A1Q9BXS0 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL25A1Q9BXS0 NFE2L3P1-201ENST00000588207 1959 ntBASIC20.25■□□□□ 0.83
COL25A1Q9BXS0 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL25A1Q9BXS0 DFFB-203ENST00000341385 572 ntTSL 5 BASIC20.25■□□□□ 0.83
COL25A1Q9BXS0 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL25A1Q9BXS0 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL25A1Q9BXS0 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC20.25■□□□□ 0.83
COL25A1Q9BXS0 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
COL25A1Q9BXS0 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL25A1Q9BXS0 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC20.25■□□□□ 0.83
COL25A1Q9BXS0 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms