Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LRCH3Q96II8 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LRCH3Q96II8 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
LRCH3Q96II8 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
LRCH3Q96II8 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
LRCH3Q96II8 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC21.55■■□□□ 1.04
LRCH3Q96II8 ATP5G2P1-201ENST00000433580 426 ntBASIC21.55■■□□□ 1.04
LRCH3Q96II8 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
LRCH3Q96II8 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC21.55■■□□□ 1.04
LRCH3Q96II8 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC21.55■■□□□ 1.04
LRCH3Q96II8 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
LRCH3Q96II8 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
LRCH3Q96II8 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
LRCH3Q96II8 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LRCH3Q96II8 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.55■■□□□ 1.04
LRCH3Q96II8 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LRCH3Q96II8 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
LRCH3Q96II8 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LRCH3Q96II8 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
LRCH3Q96II8 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.54■■□□□ 1.04
LRCH3Q96II8 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LRCH3Q96II8 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LRCH3Q96II8 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LRCH3Q96II8 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
LRCH3Q96II8 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.54■■□□□ 1.04
LRCH3Q96II8 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
LRCH3Q96II8 AC009078.2-202ENST00000463353 338 ntBASIC21.54■■□□□ 1.04
LRCH3Q96II8 SKP2-204ENST00000508514 821 ntTSL 3 BASIC21.54■■□□□ 1.04
LRCH3Q96II8 PRELID1P1-202ENST00000567272 903 ntBASIC21.54■■□□□ 1.04
LRCH3Q96II8 ECEL1P1-201ENST00000373592 1742 ntBASIC21.54■■□□□ 1.04
LRCH3Q96II8 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LRCH3Q96II8 WWC2-AS2-201ENST00000578387 2183 ntBASIC21.54■■□□□ 1.04
LRCH3Q96II8 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.54■■□□□ 1.04
LRCH3Q96II8 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC21.54■■□□□ 1.04
LRCH3Q96II8 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
LRCH3Q96II8 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.54■■□□□ 1.04
LRCH3Q96II8 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.53■■□□□ 1.04
LRCH3Q96II8 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC21.53■■□□□ 1.04
LRCH3Q96II8 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
LRCH3Q96II8 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LRCH3Q96II8 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LRCH3Q96II8 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LRCH3Q96II8 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LRCH3Q96II8 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LRCH3Q96II8 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LRCH3Q96II8 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LRCH3Q96II8 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LRCH3Q96II8 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC21.53■■□□□ 1.04
LRCH3Q96II8 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC21.53■■□□□ 1.04
LRCH3Q96II8 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LRCH3Q96II8 GXYLT1P4-201ENST00000613576 1192 ntBASIC21.53■■□□□ 1.04
LRCH3Q96II8 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC21.53■■□□□ 1.04
LRCH3Q96II8 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LRCH3Q96II8 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
LRCH3Q96II8 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
LRCH3Q96II8 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
LRCH3Q96II8 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LRCH3Q96II8 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.52■■□□□ 1.04
LRCH3Q96II8 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
LRCH3Q96II8 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
LRCH3Q96II8 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
LRCH3Q96II8 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
LRCH3Q96II8 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.52■■□□□ 1.04
LRCH3Q96II8 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC21.52■■□□□ 1.04
LRCH3Q96II8 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC21.52■■□□□ 1.04
LRCH3Q96II8 UNC93B7-201ENST00000509439 705 ntBASIC21.52■■□□□ 1.04
LRCH3Q96II8 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC21.52■■□□□ 1.04
LRCH3Q96II8 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC21.52■■□□□ 1.04
LRCH3Q96II8 CKBP1-201ENST00000565489 1086 ntBASIC21.52■■□□□ 1.04
LRCH3Q96II8 AC111152.3-201ENST00000569699 673 ntBASIC21.52■■□□□ 1.04
LRCH3Q96II8 AC026271.3-201ENST00000571884 352 ntBASIC21.52■■□□□ 1.04
LRCH3Q96II8 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
LRCH3Q96II8 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC21.52■■□□□ 1.04
LRCH3Q96II8 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.52■■□□□ 1.04
LRCH3Q96II8 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
LRCH3Q96II8 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.03
LRCH3Q96II8 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
LRCH3Q96II8 AC087742.1-201ENST00000575880 1738 ntBASIC21.52■■□□□ 1.03
LRCH3Q96II8 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
LRCH3Q96II8 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
LRCH3Q96II8 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LRCH3Q96II8 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.51■■□□□ 1.03
LRCH3Q96II8 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC21.51■■□□□ 1.03
LRCH3Q96II8 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LRCH3Q96II8 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LRCH3Q96II8 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
LRCH3Q96II8 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LRCH3Q96II8 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC21.51■■□□□ 1.03
LRCH3Q96II8 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC21.51■■□□□ 1.03
LRCH3Q96II8 KRT18P38-201ENST00000449496 1282 ntBASIC21.51■■□□□ 1.03
LRCH3Q96II8 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC21.51■■□□□ 1.03
LRCH3Q96II8 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.51■■□□□ 1.03
LRCH3Q96II8 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
LRCH3Q96II8 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC21.51■■□□□ 1.03
LRCH3Q96II8 AC116562.4-202ENST00000641738 218 ntBASIC21.51■■□□□ 1.03
LRCH3Q96II8 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LRCH3Q96II8 BCS1L-210ENST00000431802 2015 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
LRCH3Q96II8 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
LRCH3Q96II8 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.51■■□□□ 1.03
LRCH3Q96II8 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms