Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 AC093503.3-201ENST00000624917 2352 ntBASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
PPP4R4Q6NUP7 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 LETM1P2-201ENST00000597330 2178 ntBASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 H19-201ENST00000411754 1788 ntTSL 5 BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 TMEM179-206ENST00000616017 1645 ntBASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 NEFHP1-201ENST00000412845 2629 ntBASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
PPP4R4Q6NUP7 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 PARP1-202ENST00000366792 553 ntTSL 3 BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 UBE2DNL-204ENST00000602536 740 ntBASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 AC008175.2-201ENST00000612840 297 ntBASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 BID-214ENST00000617586 542 ntTSL 5 BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 AC092437.1-201ENST00000624794 1048 ntBASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
PPP4R4Q6NUP7 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 HSCB-202ENST00000398941 955 ntTSL 2 BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 AC120498.10-201ENST00000621827 505 ntBASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC18.93■□□□□ 0.62
PPP4R4Q6NUP7 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms