Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 RPS2P55-201ENST00000397318 883 ntBASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 AC012618.2-201ENST00000428058 849 ntBASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 AC133681.1-201ENST00000465482 601 ntBASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 AC107956.1-201ENST00000494359 873 ntBASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 REXO2-216ENST00000544196 452 ntTSL 3 BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 AC233702.5-201ENST00000584107 538 ntBASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 AL356652.1-201ENST00000615962 565 ntBASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC23.04■■□□□ 1.28
CCDC144BQ3MJ40 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC144BQ3MJ40 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC23.03■■□□□ 1.28
CCDC144BQ3MJ40 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC144BQ3MJ40 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC144BQ3MJ40 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC23.03■■□□□ 1.28
CCDC144BQ3MJ40 ABHD17AP6-201ENST00000458502 1044 ntBASIC23.03■■□□□ 1.28
CCDC144BQ3MJ40 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC144BQ3MJ40 EPHA5-AS1-202ENST00000509473 1177 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC144BQ3MJ40 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC23.03■■□□□ 1.28
CCDC144BQ3MJ40 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC23.03■■□□□ 1.28
CCDC144BQ3MJ40 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC23.03■■□□□ 1.28
CCDC144BQ3MJ40 REXO1L12P-201ENST00000622156 912 ntBASIC23.03■■□□□ 1.28
CCDC144BQ3MJ40 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC23.03■■□□□ 1.28
CCDC144BQ3MJ40 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC23.03■■□□□ 1.28
CCDC144BQ3MJ40 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CCDC144BQ3MJ40 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 AC020907.5-201ENST00000624372 1936 ntBASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CCDC144BQ3MJ40 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 DET1-207ENST00000564406 2315 ntTSL 2 BASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 AC087289.5-201ENST00000586076 3175 ntBASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 AC211429.1-201ENST00000415277 523 ntBASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 AC239809.2-201ENST00000415381 517 ntBASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 MOK-233ENST00000524214 1539 ntTSL 2 BASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CCDC144BQ3MJ40 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC144BQ3MJ40 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC144BQ3MJ40 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC144BQ3MJ40 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC144BQ3MJ40 USP39-204ENST00000409766 2033 ntTSL 2 BASIC23■■□□□ 1.27
CCDC144BQ3MJ40 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC144BQ3MJ40 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC144BQ3MJ40 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC144BQ3MJ40 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC144BQ3MJ40 TSPY7P-201ENST00000431358 1114 ntBASIC23■■□□□ 1.27
CCDC144BQ3MJ40 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC144BQ3MJ40 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC23■■□□□ 1.27
CCDC144BQ3MJ40 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC144BQ3MJ40 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
CCDC144BQ3MJ40 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
CCDC144BQ3MJ40 AL512408.1-201ENST00000569378 2000 ntBASIC22.99■■□□□ 1.27
CCDC144BQ3MJ40 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms