Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC26.04■■□□□ 1.76
RIPK4P57078 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC26.04■■□□□ 1.76
RIPK4P57078 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC26.04■■□□□ 1.76
RIPK4P57078 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
RIPK4P57078 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC26.04■■□□□ 1.76
RIPK4P57078 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC26.04■■□□□ 1.76
RIPK4P57078 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC26.04■■□□□ 1.76
RIPK4P57078 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
RIPK4P57078 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC26.03■■□□□ 1.76
RIPK4P57078 AC112907.3-201ENST00000577781 2400 ntBASIC26.03■■□□□ 1.76
RIPK4P57078 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
RIPK4P57078 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC26.03■■□□□ 1.76
RIPK4P57078 F2R-202ENST00000505600 442 ntTSL 2 BASIC26.03■■□□□ 1.76
RIPK4P57078 RHOD-202ENST00000532559 538 ntTSL 3 BASIC26.03■■□□□ 1.76
RIPK4P57078 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC26.03■■□□□ 1.76
RIPK4P57078 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
RIPK4P57078 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC26.03■■□□□ 1.76
RIPK4P57078 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC26.03■■□□□ 1.76
RIPK4P57078 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
RIPK4P57078 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
RIPK4P57078 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC26.03■■□□□ 1.76
RIPK4P57078 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC26.03■■□□□ 1.76
RIPK4P57078 TFP1-202ENST00000475455 1573 ntBASIC26.03■■□□□ 1.76
RIPK4P57078 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
RIPK4P57078 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC26.02■■□□□ 1.76
RIPK4P57078 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
RIPK4P57078 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC26.02■■□□□ 1.76
RIPK4P57078 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC26.02■■□□□ 1.76
RIPK4P57078 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC26.02■■□□□ 1.76
RIPK4P57078 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC26.02■■□□□ 1.76
RIPK4P57078 CENPS-CORT-203ENST00000470413 626 ntTSL 2 BASIC26.02■■□□□ 1.76
RIPK4P57078 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC26.02■■□□□ 1.76
RIPK4P57078 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC26.02■■□□□ 1.76
RIPK4P57078 TK2-204ENST00000525974 1178 ntTSL 2 BASIC26.02■■□□□ 1.76
RIPK4P57078 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC26.02■■□□□ 1.76
RIPK4P57078 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
RIPK4P57078 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC26.02■■□□□ 1.76
RIPK4P57078 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC26.02■■□□□ 1.76
RIPK4P57078 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
RIPK4P57078 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC26.02■■□□□ 1.76
RIPK4P57078 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
RIPK4P57078 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC26.02■■□□□ 1.76
RIPK4P57078 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC26.02■■□□□ 1.76
RIPK4P57078 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
RIPK4P57078 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC26.02■■□□□ 1.76
RIPK4P57078 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
RIPK4P57078 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
RIPK4P57078 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.76
RIPK4P57078 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
RIPK4P57078 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
RIPK4P57078 TREX2-204ENST00000370212 861 ntTSL 5 BASIC26.01■■□□□ 1.75
RIPK4P57078 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC26.01■■□□□ 1.75
RIPK4P57078 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC26.01■■□□□ 1.75
RIPK4P57078 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
RIPK4P57078 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC26.01■■□□□ 1.75
RIPK4P57078 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC26.01■■□□□ 1.75
RIPK4P57078 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
RIPK4P57078 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC26.01■■□□□ 1.75
RIPK4P57078 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC26.01■■□□□ 1.75
RIPK4P57078 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC26.01■■□□□ 1.75
RIPK4P57078 SPIB-206ENST00000596074 847 ntTSL 2 BASIC26.01■■□□□ 1.75
RIPK4P57078 AC110285.5-201ENST00000611501 352 ntBASIC26.01■■□□□ 1.75
RIPK4P57078 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC26.01■■□□□ 1.75
RIPK4P57078 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC26.01■■□□□ 1.75
RIPK4P57078 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
RIPK4P57078 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC26■■□□□ 1.75
RIPK4P57078 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC26■■□□□ 1.75
RIPK4P57078 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC26■■□□□ 1.75
RIPK4P57078 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC26■■□□□ 1.75
RIPK4P57078 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC26■■□□□ 1.75
RIPK4P57078 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC26■■□□□ 1.75
RIPK4P57078 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC26■■□□□ 1.75
RIPK4P57078 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC26■■□□□ 1.75
RIPK4P57078 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC26■■□□□ 1.75
RIPK4P57078 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC26■■□□□ 1.75
RIPK4P57078 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC26■■□□□ 1.75
RIPK4P57078 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC26■■□□□ 1.75
RIPK4P57078 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC26■■□□□ 1.75
RIPK4P57078 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC26■■□□□ 1.75
RIPK4P57078 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC26■■□□□ 1.75
RIPK4P57078 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
RIPK4P57078 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC26■■□□□ 1.75
RIPK4P57078 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
RIPK4P57078 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
RIPK4P57078 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
RIPK4P57078 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC25.99■■□□□ 1.75
RIPK4P57078 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC25.99■■□□□ 1.75
RIPK4P57078 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
RIPK4P57078 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
RIPK4P57078 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC25.99■■□□□ 1.75
RIPK4P57078 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC25.99■■□□□ 1.75
RIPK4P57078 UBE2SP1-201ENST00000450587 669 ntBASIC25.99■■□□□ 1.75
RIPK4P57078 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC25.99■■□□□ 1.75
RIPK4P57078 DET1-205ENST00000558413 583 ntTSL 4 BASIC25.99■■□□□ 1.75
RIPK4P57078 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC25.99■■□□□ 1.75
RIPK4P57078 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC25.99■■□□□ 1.75
RIPK4P57078 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
RIPK4P57078 HSPA8-202ENST00000453788 2004 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
RIPK4P57078 NBPF21P-201ENST00000425093 1451 ntBASIC25.98■■□□□ 1.75
RIPK4P57078 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC25.98■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms