Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.65■□□□□ 0.9
CDH6P55285 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDH6P55285 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.65■□□□□ 0.9
CDH6P55285 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.65■□□□□ 0.9
CDH6P55285 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
CDH6P55285 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.65■□□□□ 0.9
CDH6P55285 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
CDH6P55285 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
CDH6P55285 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.65■□□□□ 0.9
CDH6P55285 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
CDH6P55285 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.64■□□□□ 0.9
CDH6P55285 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.64■□□□□ 0.89
CDH6P55285 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH6P55285 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH6P55285 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.64■□□□□ 0.89
CDH6P55285 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.64■□□□□ 0.89
CDH6P55285 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
CDH6P55285 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.64■□□□□ 0.89
CDH6P55285 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.64■□□□□ 0.89
CDH6P55285 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CDH6P55285 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC20.64■□□□□ 0.89
CDH6P55285 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC20.64■□□□□ 0.89
CDH6P55285 PFKL-212ENST00000628044 129 ntTSL 3 BASIC20.64■□□□□ 0.89
CDH6P55285 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
CDH6P55285 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH6P55285 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
CDH6P55285 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.64■□□□□ 0.89
CDH6P55285 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH6P55285 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
CDH6P55285 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.63■□□□□ 0.89
CDH6P55285 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.63■□□□□ 0.89
CDH6P55285 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH6P55285 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC20.63■□□□□ 0.89
CDH6P55285 AC091874.3-201ENST00000512672 1195 ntBASIC20.63■□□□□ 0.89
CDH6P55285 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.63■□□□□ 0.89
CDH6P55285 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC20.63■□□□□ 0.89
CDH6P55285 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.63■□□□□ 0.89
CDH6P55285 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
CDH6P55285 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH6P55285 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CDH6P55285 NFIL3-201ENST00000297689 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH6P55285 AL158211.5-201ENST00000623583 2518 ntBASIC20.63■□□□□ 0.89
CDH6P55285 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH6P55285 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH6P55285 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CDH6P55285 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.62■□□□□ 0.89
CDH6P55285 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC20.62■□□□□ 0.89
CDH6P55285 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC20.62■□□□□ 0.89
CDH6P55285 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDH6P55285 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH6P55285 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDH6P55285 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDH6P55285 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.62■□□□□ 0.89
CDH6P55285 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.62■□□□□ 0.89
CDH6P55285 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.62■□□□□ 0.89
CDH6P55285 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.62■□□□□ 0.89
CDH6P55285 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH6P55285 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH6P55285 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH6P55285 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH6P55285 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.62■□□□□ 0.89
CDH6P55285 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH6P55285 MIR4758-201ENST00000577688 71 ntBASIC20.62■□□□□ 0.89
CDH6P55285 AC104771.1-201ENST00000603335 964 ntBASIC20.62■□□□□ 0.89
CDH6P55285 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CDH6P55285 AC009237.14-201ENST00000609975 1594 ntBASIC20.62■□□□□ 0.89
CDH6P55285 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH6P55285 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CDH6P55285 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH6P55285 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.61■□□□□ 0.89
CDH6P55285 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CDH6P55285 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH6P55285 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CDH6P55285 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
CDH6P55285 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.61■□□□□ 0.89
CDH6P55285 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CDH6P55285 BET1L-207ENST00000529614 560 ntTSL 5 BASIC20.61■□□□□ 0.89
CDH6P55285 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.61■□□□□ 0.89
CDH6P55285 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.61■□□□□ 0.89
CDH6P55285 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH6P55285 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CDH6P55285 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH6P55285 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH6P55285 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CDH6P55285 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.61■□□□□ 0.89
CDH6P55285 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDH6P55285 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDH6P55285 PHGDH-210ENST00000641115 1638 ntBASIC20.6■□□□□ 0.89
CDH6P55285 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC20.6■□□□□ 0.89
CDH6P55285 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDH6P55285 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDH6P55285 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDH6P55285 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC20.6■□□□□ 0.89
CDH6P55285 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CDH6P55285 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CDH6P55285 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.6■□□□□ 0.89
CDH6P55285 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
CDH6P55285 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CDH6P55285 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.6■□□□□ 0.89
CDH6P55285 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC20.6■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms