Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 FDX2-206ENST00000492239 773 ntTSL 2 BASIC23.07■■□□□ 1.28
CTCFP49711 PRSS44-201ENST00000515154 1146 ntBASIC23.07■■□□□ 1.28
CTCFP49711 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC23.07■■□□□ 1.28
CTCFP49711 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC23.07■■□□□ 1.28
CTCFP49711 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC23.07■■□□□ 1.28
CTCFP49711 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
CTCFP49711 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC23.07■■□□□ 1.28
CTCFP49711 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
CTCFP49711 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
CTCFP49711 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CTCFP49711 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
CTCFP49711 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC23.07■■□□□ 1.28
CTCFP49711 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC23.06■■□□□ 1.28
CTCFP49711 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC23.06■■□□□ 1.28
CTCFP49711 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CTCFP49711 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CTCFP49711 TERT-206ENST00000508104 2486 ntTSL 5 BASIC23.06■■□□□ 1.28
CTCFP49711 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CTCFP49711 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
CTCFP49711 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC23.06■■□□□ 1.28
CTCFP49711 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CTCFP49711 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CTCFP49711 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC23.06■■□□□ 1.28
CTCFP49711 AC037459.1-202ENST00000430850 531 ntAPPRIS P1 TSL 4 BASIC23.06■■□□□ 1.28
CTCFP49711 UNC93B7-201ENST00000509439 705 ntBASIC23.06■■□□□ 1.28
CTCFP49711 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC23.06■■□□□ 1.28
CTCFP49711 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
CTCFP49711 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC23.06■■□□□ 1.28
CTCFP49711 AL445675.2-201ENST00000620291 557 ntBASIC23.06■■□□□ 1.28
CTCFP49711 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC23.06■■□□□ 1.28
CTCFP49711 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CTCFP49711 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
CTCFP49711 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CTCFP49711 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
CTCFP49711 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CTCFP49711 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC23.05■■□□□ 1.28
CTCFP49711 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CTCFP49711 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CTCFP49711 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
CTCFP49711 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CTCFP49711 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
CTCFP49711 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC23.05■■□□□ 1.28
CTCFP49711 UBA52-210ENST00000598780 668 ntAPPRIS P1 TSL 3 BASIC23.05■■□□□ 1.28
CTCFP49711 AC092119.3-201ENST00000612618 583 ntBASIC23.05■■□□□ 1.28
CTCFP49711 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC23.05■■□□□ 1.28
CTCFP49711 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC23.04■■□□□ 1.28
CTCFP49711 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC23.04■■□□□ 1.28
CTCFP49711 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CTCFP49711 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CTCFP49711 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CTCFP49711 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC23.04■■□□□ 1.28
CTCFP49711 KRT18P13-201ENST00000400056 1290 ntBASIC23.04■■□□□ 1.28
CTCFP49711 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC23.04■■□□□ 1.28
CTCFP49711 NPAP1P7-201ENST00000613027 823 ntBASIC23.04■■□□□ 1.28
CTCFP49711 EP400NL-214ENST00000641289 2402 ntBASIC23.04■■□□□ 1.28
CTCFP49711 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CTCFP49711 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC23.04■■□□□ 1.28
CTCFP49711 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
CTCFP49711 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
CTCFP49711 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC23.04■■□□□ 1.28
CTCFP49711 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CTCFP49711 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
CTCFP49711 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
CTCFP49711 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CTCFP49711 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC23.03■■□□□ 1.28
CTCFP49711 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC23.03■■□□□ 1.28
CTCFP49711 AL441883.1-201ENST00000566170 1045 ntBASIC23.03■■□□□ 1.28
CTCFP49711 AL512604.3-201ENST00000569583 964 ntBASIC23.03■■□□□ 1.28
CTCFP49711 DEF8-228ENST00000610455 816 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
CTCFP49711 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC23.03■■□□□ 1.28
CTCFP49711 AC092053.2-201ENST00000640557 1818 ntBASIC23.03■■□□□ 1.28
CTCFP49711 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC23.03■■□□□ 1.28
CTCFP49711 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CTCFP49711 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC23.03■■□□□ 1.28
CTCFP49711 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CTCFP49711 COMT-203ENST00000403184 2217 ntTSL 2 BASIC23.02■■□□□ 1.28
CTCFP49711 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CTCFP49711 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
CTCFP49711 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC23.02■■□□□ 1.28
CTCFP49711 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC23.02■■□□□ 1.28
CTCFP49711 SLC25A1P2-201ENST00000430693 912 ntBASIC23.02■■□□□ 1.28
CTCFP49711 KRT18P38-201ENST00000449496 1282 ntBASIC23.02■■□□□ 1.28
CTCFP49711 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CTCFP49711 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CTCFP49711 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CTCFP49711 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC23.02■■□□□ 1.28
CTCFP49711 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
CTCFP49711 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC23.02■■□□□ 1.28
CTCFP49711 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CTCFP49711 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
CTCFP49711 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
CTCFP49711 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CTCFP49711 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
CTCFP49711 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC23.01■■□□□ 1.27
CTCFP49711 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
CTCFP49711 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CTCFP49711 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC23.01■■□□□ 1.27
CTCFP49711 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC23.01■■□□□ 1.27
CTCFP49711 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC23.01■■□□□ 1.27
CTCFP49711 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms