Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC19.43■□□□□ 0.7
SHMT2P34897 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHMT2P34897 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHMT2P34897 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SHMT2P34897 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.43■□□□□ 0.7
SHMT2P34897 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHMT2P34897 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHMT2P34897 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
SHMT2P34897 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHMT2P34897 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHMT2P34897 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHMT2P34897 AC006557.6-201ENST00000623071 864 ntBASIC19.43■□□□□ 0.7
SHMT2P34897 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SHMT2P34897 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC19.43■□□□□ 0.7
SHMT2P34897 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHMT2P34897 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHMT2P34897 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
SHMT2P34897 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC19.43■□□□□ 0.7
SHMT2P34897 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.42■□□□□ 0.7
SHMT2P34897 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC19.42■□□□□ 0.7
SHMT2P34897 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHMT2P34897 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC19.42■□□□□ 0.7
SHMT2P34897 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHMT2P34897 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHMT2P34897 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SHMT2P34897 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.42■□□□□ 0.7
SHMT2P34897 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC19.42■□□□□ 0.7
SHMT2P34897 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC19.42■□□□□ 0.7
SHMT2P34897 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC19.42■□□□□ 0.7
SHMT2P34897 AC008687.6-201ENST00000596318 630 ntBASIC19.42■□□□□ 0.7
SHMT2P34897 AC008403.3-201ENST00000598924 454 ntBASIC19.42■□□□□ 0.7
SHMT2P34897 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC19.42■□□□□ 0.7
SHMT2P34897 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
SHMT2P34897 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.42■□□□□ 0.7
SHMT2P34897 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SHMT2P34897 KRT8P17-201ENST00000453110 1448 ntBASIC19.42■□□□□ 0.7
SHMT2P34897 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.41■□□□□ 0.7
SHMT2P34897 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHMT2P34897 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHMT2P34897 AC020907.5-201ENST00000624372 1936 ntBASIC19.41■□□□□ 0.7
SHMT2P34897 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHMT2P34897 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC19.41■□□□□ 0.7
SHMT2P34897 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHMT2P34897 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHMT2P34897 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHMT2P34897 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SHMT2P34897 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHMT2P34897 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHMT2P34897 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SHMT2P34897 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC19.41■□□□□ 0.7
SHMT2P34897 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC19.41■□□□□ 0.7
SHMT2P34897 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC19.41■□□□□ 0.7
SHMT2P34897 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
SHMT2P34897 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHMT2P34897 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SHMT2P34897 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SHMT2P34897 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHMT2P34897 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC19.41■□□□□ 0.7
SHMT2P34897 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SHMT2P34897 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
SHMT2P34897 AC087289.5-201ENST00000586076 3175 ntBASIC19.4■□□□□ 0.7
SHMT2P34897 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SHMT2P34897 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHMT2P34897 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHMT2P34897 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHMT2P34897 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHMT2P34897 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SHMT2P34897 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHMT2P34897 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHMT2P34897 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHMT2P34897 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC19.4■□□□□ 0.7
SHMT2P34897 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.4■□□□□ 0.7
SHMT2P34897 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.4■□□□□ 0.7
SHMT2P34897 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHMT2P34897 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
SHMT2P34897 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SHMT2P34897 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SHMT2P34897 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHMT2P34897 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SHMT2P34897 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC19.4■□□□□ 0.7
SHMT2P34897 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC19.4■□□□□ 0.7
SHMT2P34897 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SHMT2P34897 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
SHMT2P34897 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
SHMT2P34897 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC19.39■□□□□ 0.69
SHMT2P34897 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHMT2P34897 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SHMT2P34897 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHMT2P34897 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHMT2P34897 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SHMT2P34897 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SHMT2P34897 KRT17P3-201ENST00000420566 1262 ntBASIC19.39■□□□□ 0.69
SHMT2P34897 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.39■□□□□ 0.69
SHMT2P34897 IRX5-204ENST00000560154 879 ntTSL 5 BASIC19.39■□□□□ 0.69
SHMT2P34897 AC006058.3-201ENST00000606217 1069 ntBASIC19.39■□□□□ 0.69
SHMT2P34897 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SHMT2P34897 ITM2C-210ENST00000620962 501 ntBASIC19.39■□□□□ 0.69
SHMT2P34897 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SHMT2P34897 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SHMT2P34897 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms