Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.63■□□□□ 0.89
VCANP13611 MALL-203ENST00000427178 1070 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VCANP13611 AL662844.1-201ENST00000546340 181 ntBASIC20.63■□□□□ 0.89
VCANP13611 KRT18P1-202ENST00000452408 1331 ntBASIC20.63■□□□□ 0.89
VCANP13611 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
VCANP13611 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCANP13611 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCANP13611 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCANP13611 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC20.63■□□□□ 0.89
VCANP13611 YBX1P10-201ENST00000444752 975 ntBASIC20.63■□□□□ 0.89
VCANP13611 AL160237.2-201ENST00000556165 472 ntBASIC20.63■□□□□ 0.89
VCANP13611 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC20.63■□□□□ 0.89
VCANP13611 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
VCANP13611 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCANP13611 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCANP13611 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCANP13611 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
VCANP13611 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.63■□□□□ 0.89
VCANP13611 AL139424.1-201ENST00000607572 797 ntBASIC20.63■□□□□ 0.89
VCANP13611 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
VCANP13611 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC20.63■□□□□ 0.89
VCANP13611 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.63■□□□□ 0.89
VCANP13611 PODNL1-203ENST00000538371 1826 ntAPPRIS ALT2 TSL 2 BASIC20.63■□□□□ 0.89
VCANP13611 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC20.63■□□□□ 0.89
VCANP13611 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC20.63■□□□□ 0.89
VCANP13611 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC20.62■□□□□ 0.89
VCANP13611 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.62■□□□□ 0.89
VCANP13611 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
VCANP13611 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC20.62■□□□□ 0.89
VCANP13611 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.62■□□□□ 0.89
VCANP13611 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.62■□□□□ 0.89
VCANP13611 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 AL031432.5-201ENST00000641059 760 ntBASIC20.62■□□□□ 0.89
VCANP13611 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC20.62■□□□□ 0.89
VCANP13611 COX10-202ENST00000429152 875 ntTSL 2 BASIC20.62■□□□□ 0.89
VCANP13611 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
VCANP13611 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC20.62■□□□□ 0.89
VCANP13611 IFNL4P1-201ENST00000607083 540 ntBASIC20.62■□□□□ 0.89
VCANP13611 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.62■□□□□ 0.89
VCANP13611 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VCANP13611 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
VCANP13611 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.61■□□□□ 0.89
VCANP13611 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.61■□□□□ 0.89
VCANP13611 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
VCANP13611 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
VCANP13611 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.61■□□□□ 0.89
VCANP13611 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
VCANP13611 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
VCANP13611 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC20.61■□□□□ 0.89
VCANP13611 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC20.61■□□□□ 0.89
VCANP13611 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VCANP13611 DGUOK-AS1-203ENST00000453103 601 ntTSL 3 BASIC20.6■□□□□ 0.89
VCANP13611 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.6■□□□□ 0.89
VCANP13611 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC20.6■□□□□ 0.89
VCANP13611 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VCANP13611 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
VCANP13611 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC20.6■□□□□ 0.89
VCANP13611 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.6■□□□□ 0.89
VCANP13611 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VCANP13611 PPIH-202ENST00000372549 327 ntTSL 3 BASIC20.6■□□□□ 0.89
VCANP13611 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC20.6■□□□□ 0.89
VCANP13611 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC20.6■□□□□ 0.89
VCANP13611 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.6■□□□□ 0.89
VCANP13611 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
VCANP13611 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.6■□□□□ 0.89
VCANP13611 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
VCANP13611 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VCANP13611 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
VCANP13611 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.6■□□□□ 0.89
VCANP13611 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC20.6■□□□□ 0.89
VCANP13611 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.6■□□□□ 0.89
VCANP13611 AC092865.5-201ENST00000545435 363 ntBASIC20.6■□□□□ 0.89
VCANP13611 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
VCANP13611 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
VCANP13611 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
VCANP13611 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
VCANP13611 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCANP13611 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC20.59■□□□□ 0.89
VCANP13611 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC20.59■□□□□ 0.89
VCANP13611 AC092329.2-201ENST00000598402 547 ntBASIC20.59■□□□□ 0.89
VCANP13611 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
VCANP13611 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms