Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC19.43■□□□□ 0.7
TNFP01375 FAM197Y1-201ENST00000421178 764 ntBASIC19.43■□□□□ 0.7
TNFP01375 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TNFP01375 FDX2-207ENST00000494368 584 ntTSL 4 BASIC19.43■□□□□ 0.7
TNFP01375 BX088651.1-201ENST00000540551 451 ntBASIC19.43■□□□□ 0.7
TNFP01375 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC19.43■□□□□ 0.7
TNFP01375 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC19.43■□□□□ 0.7
TNFP01375 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
TNFP01375 AC026471.5-201ENST00000615068 467 ntBASIC19.43■□□□□ 0.7
TNFP01375 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.43■□□□□ 0.7
TNFP01375 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC19.43■□□□□ 0.7
TNFP01375 SMG8-203ENST00000578922 2178 ntBASIC19.43■□□□□ 0.7
TNFP01375 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
TNFP01375 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
TNFP01375 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TNFP01375 PALM-208ENST00000592155 2272 ntTSL 4 BASIC19.42■□□□□ 0.7
TNFP01375 RABEPK-204ENST00000394125 1466 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TNFP01375 AC018553.1-201ENST00000616682 1458 ntBASIC19.42■□□□□ 0.7
TNFP01375 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TNFP01375 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
TNFP01375 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TNFP01375 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TNFP01375 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC19.42■□□□□ 0.7
TNFP01375 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TNFP01375 TFP1-202ENST00000475455 1573 ntBASIC19.42■□□□□ 0.7
TNFP01375 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TNFP01375 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC19.42■□□□□ 0.7
TNFP01375 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TNFP01375 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.42■□□□□ 0.7
TNFP01375 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.42■□□□□ 0.7
TNFP01375 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
TNFP01375 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TNFP01375 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC19.42■□□□□ 0.7
TNFP01375 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.42■□□□□ 0.7
TNFP01375 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
TNFP01375 AC007375.3-201ENST00000600936 2314 ntBASIC19.42■□□□□ 0.7
TNFP01375 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
TNFP01375 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
TNFP01375 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.42■□□□□ 0.7
TNFP01375 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
TNFP01375 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
TNFP01375 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
TNFP01375 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TNFP01375 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TNFP01375 STK25-204ENST00000405585 1643 ntTSL 2 BASIC19.41■□□□□ 0.7
TNFP01375 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.41■□□□□ 0.7
TNFP01375 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
TNFP01375 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TNFP01375 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.41■□□□□ 0.7
TNFP01375 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.41■□□□□ 0.7
TNFP01375 AL353708.3-201ENST00000610272 989 ntBASIC19.41■□□□□ 0.7
TNFP01375 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
TNFP01375 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
TNFP01375 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC19.41■□□□□ 0.7
TNFP01375 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
TNFP01375 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC19.4■□□□□ 0.7
TNFP01375 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.4■□□□□ 0.7
TNFP01375 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TNFP01375 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TNFP01375 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
TNFP01375 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
TNFP01375 BABAM1-202ENST00000447614 930 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
TNFP01375 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC19.4■□□□□ 0.7
TNFP01375 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.4■□□□□ 0.7
TNFP01375 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC19.4■□□□□ 0.7
TNFP01375 SNX21-213ENST00000614929 587 ntTSL 5 BASIC19.4■□□□□ 0.7
TNFP01375 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
TNFP01375 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
TNFP01375 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.4■□□□□ 0.7
TNFP01375 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.4■□□□□ 0.7
TNFP01375 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC19.4■□□□□ 0.7
TNFP01375 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
TNFP01375 PHGDH-210ENST00000641115 1638 ntBASIC19.4■□□□□ 0.7
TNFP01375 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.4■□□□□ 0.7
TNFP01375 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
TNFP01375 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
TNFP01375 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.39■□□□□ 0.69
TNFP01375 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.69
TNFP01375 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.39■□□□□ 0.69
TNFP01375 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TNFP01375 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.39■□□□□ 0.69
TNFP01375 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TNFP01375 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.39■□□□□ 0.69
TNFP01375 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.39■□□□□ 0.69
TNFP01375 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC19.39■□□□□ 0.69
TNFP01375 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TNFP01375 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC19.39■□□□□ 0.69
TNFP01375 AL355075.4-201ENST00000554988 638 ntBASIC19.39■□□□□ 0.69
TNFP01375 AP003071.4-201ENST00000562276 1284 ntBASIC19.39■□□□□ 0.69
TNFP01375 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.39■□□□□ 0.69
TNFP01375 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
TNFP01375 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.39■□□□□ 0.69
TNFP01375 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TNFP01375 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC19.39■□□□□ 0.69
TNFP01375 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TNFP01375 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
TNFP01375 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TNFP01375 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
TNFP01375 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
TNFP01375 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms