Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SEMA3DO95025 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC18.99■□□□□ 0.63
SEMA3DO95025 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SEMA3DO95025 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SEMA3DO95025 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SEMA3DO95025 AC009237.14-201ENST00000609975 1594 ntBASIC18.99■□□□□ 0.63
SEMA3DO95025 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.99■□□□□ 0.63
SEMA3DO95025 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
SEMA3DO95025 RNF5-203ENST00000375094 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SEMA3DO95025 BID-204ENST00000399767 2129 ntTSL 2 BASIC18.99■□□□□ 0.63
SEMA3DO95025 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SEMA3DO95025 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.99■□□□□ 0.63
SEMA3DO95025 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
SEMA3DO95025 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.99■□□□□ 0.63
SEMA3DO95025 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC18.99■□□□□ 0.63
SEMA3DO95025 PFKL-212ENST00000628044 129 ntTSL 3 BASIC18.99■□□□□ 0.63
SEMA3DO95025 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SEMA3DO95025 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SEMA3DO95025 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SEMA3DO95025 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SEMA3DO95025 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SEMA3DO95025 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SEMA3DO95025 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SEMA3DO95025 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SEMA3DO95025 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SEMA3DO95025 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.99■□□□□ 0.63
SEMA3DO95025 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SEMA3DO95025 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
SEMA3DO95025 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC18.98■□□□□ 0.63
SEMA3DO95025 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.98■□□□□ 0.63
SEMA3DO95025 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SEMA3DO95025 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SEMA3DO95025 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC18.98■□□□□ 0.63
SEMA3DO95025 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SEMA3DO95025 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
SEMA3DO95025 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC18.98■□□□□ 0.63
SEMA3DO95025 OR2A1-AS1-201ENST00000462305 773 ntBASIC18.98■□□□□ 0.63
SEMA3DO95025 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC18.98■□□□□ 0.63
SEMA3DO95025 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SEMA3DO95025 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC18.98■□□□□ 0.63
SEMA3DO95025 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC18.98■□□□□ 0.63
SEMA3DO95025 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SEMA3DO95025 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SEMA3DO95025 TOR2A-203ENST00000373284 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SEMA3DO95025 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SEMA3DO95025 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SEMA3DO95025 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SEMA3DO95025 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SEMA3DO95025 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SEMA3DO95025 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.98■□□□□ 0.63
SEMA3DO95025 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SEMA3DO95025 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SEMA3DO95025 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SEMA3DO95025 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SEMA3DO95025 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
SEMA3DO95025 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SEMA3DO95025 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.97■□□□□ 0.63
SEMA3DO95025 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC18.97■□□□□ 0.63
SEMA3DO95025 PPP1R14BP2-201ENST00000426284 444 ntBASIC18.97■□□□□ 0.63
SEMA3DO95025 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC18.97■□□□□ 0.63
SEMA3DO95025 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC18.97■□□□□ 0.63
SEMA3DO95025 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC18.97■□□□□ 0.63
SEMA3DO95025 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC18.97■□□□□ 0.63
SEMA3DO95025 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC18.97■□□□□ 0.63
SEMA3DO95025 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SEMA3DO95025 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SEMA3DO95025 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SEMA3DO95025 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SEMA3DO95025 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.97■□□□□ 0.63
SEMA3DO95025 AP001271.2-201ENST00000624018 1556 ntBASIC18.97■□□□□ 0.63
SEMA3DO95025 PCDHAC2-203ENST00000615316 3011 ntBASIC18.97■□□□□ 0.63
SEMA3DO95025 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC18.97■□□□□ 0.63
SEMA3DO95025 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
SEMA3DO95025 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
SEMA3DO95025 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC18.97■□□□□ 0.63
SEMA3DO95025 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
SEMA3DO95025 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.96■□□□□ 0.63
SEMA3DO95025 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SEMA3DO95025 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SEMA3DO95025 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
SEMA3DO95025 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC18.96■□□□□ 0.63
SEMA3DO95025 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.96■□□□□ 0.63
SEMA3DO95025 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SEMA3DO95025 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SEMA3DO95025 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SEMA3DO95025 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.96■□□□□ 0.63
SEMA3DO95025 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC18.96■□□□□ 0.63
SEMA3DO95025 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.96■□□□□ 0.63
SEMA3DO95025 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SEMA3DO95025 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC18.96■□□□□ 0.63
SEMA3DO95025 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC18.96■□□□□ 0.63
SEMA3DO95025 GXYLT1P5-201ENST00000614548 1189 ntBASIC18.96■□□□□ 0.63
SEMA3DO95025 MYC-209ENST00000641252 345 ntBASIC18.96■□□□□ 0.63
SEMA3DO95025 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
SEMA3DO95025 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
SEMA3DO95025 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.96■□□□□ 0.63
SEMA3DO95025 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.96■□□□□ 0.63
SEMA3DO95025 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
SEMA3DO95025 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.96■□□□□ 0.63
SEMA3DO95025 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms