Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
HOXC11O43248 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.27■□□□□ 0.83
HOXC11O43248 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.27■□□□□ 0.83
HOXC11O43248 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
HOXC11O43248 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC20.26■□□□□ 0.83
HOXC11O43248 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC11O43248 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.26■□□□□ 0.83
HOXC11O43248 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC11O43248 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.26■□□□□ 0.83
HOXC11O43248 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC20.26■□□□□ 0.83
HOXC11O43248 YBX1P10-201ENST00000444752 975 ntBASIC20.26■□□□□ 0.83
HOXC11O43248 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC20.26■□□□□ 0.83
HOXC11O43248 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC11O43248 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.26■□□□□ 0.83
HOXC11O43248 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC20.26■□□□□ 0.83
HOXC11O43248 REXO1L10P-201ENST00000615707 1290 ntBASIC20.26■□□□□ 0.83
HOXC11O43248 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.26■□□□□ 0.83
HOXC11O43248 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC11O43248 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
HOXC11O43248 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC20.26■□□□□ 0.83
HOXC11O43248 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.26■□□□□ 0.83
HOXC11O43248 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
HOXC11O43248 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
HOXC11O43248 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC11O43248 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC11O43248 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC11O43248 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC11O43248 STK25-204ENST00000405585 1643 ntTSL 2 BASIC20.25■□□□□ 0.83
HOXC11O43248 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC11O43248 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC11O43248 RBM17P1-201ENST00000453646 1190 ntBASIC20.25■□□□□ 0.83
HOXC11O43248 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC11O43248 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC11O43248 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.25■□□□□ 0.83
HOXC11O43248 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.25■□□□□ 0.83
HOXC11O43248 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.25■□□□□ 0.83
HOXC11O43248 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC11O43248 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC11O43248 KRT16P1-201ENST00000399124 1418 ntBASIC20.25■□□□□ 0.83
HOXC11O43248 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
HOXC11O43248 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
HOXC11O43248 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.25■□□□□ 0.83
HOXC11O43248 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC11O43248 PHGDH-210ENST00000641115 1638 ntBASIC20.24■□□□□ 0.83
HOXC11O43248 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC11O43248 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC11O43248 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC11O43248 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC11O43248 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
HOXC11O43248 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC11O43248 MMP23A-201ENST00000234610 1017 ntBASIC20.24■□□□□ 0.83
HOXC11O43248 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.24■□□□□ 0.83
HOXC11O43248 KRT18P16-201ENST00000510337 1294 ntBASIC20.24■□□□□ 0.83
HOXC11O43248 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC11O43248 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC11O43248 CR392000.1-201ENST00000624770 1228 ntBASIC20.24■□□□□ 0.83
HOXC11O43248 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC11O43248 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
HOXC11O43248 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC20.24■□□□□ 0.83
HOXC11O43248 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.23■□□□□ 0.83
HOXC11O43248 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC11O43248 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC11O43248 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC11O43248 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC11O43248 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC11O43248 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC11O43248 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC11O43248 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC20.23■□□□□ 0.83
HOXC11O43248 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.23■□□□□ 0.83
HOXC11O43248 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC20.23■□□□□ 0.83
HOXC11O43248 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
HOXC11O43248 AC116562.2-201ENST00000507042 360 ntBASIC20.23■□□□□ 0.83
HOXC11O43248 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.23■□□□□ 0.83
HOXC11O43248 NOL3-204ENST00000564053 1592 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
HOXC11O43248 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC11O43248 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
HOXC11O43248 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.23■□□□□ 0.83
HOXC11O43248 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.23■□□□□ 0.83
HOXC11O43248 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC11O43248 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC11O43248 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC11O43248 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC11O43248 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
HOXC11O43248 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.23■□□□□ 0.83
HOXC11O43248 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
HOXC11O43248 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.22■□□□□ 0.83
HOXC11O43248 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC11O43248 AC007375.3-201ENST00000600936 2314 ntBASIC20.22■□□□□ 0.83
HOXC11O43248 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
HOXC11O43248 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC11O43248 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC11O43248 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.22■□□□□ 0.83
HOXC11O43248 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.22■□□□□ 0.83
HOXC11O43248 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC20.22■□□□□ 0.83
HOXC11O43248 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
HOXC11O43248 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.22■□□□□ 0.83
HOXC11O43248 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC20.22■□□□□ 0.83
HOXC11O43248 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.22■□□□□ 0.83
HOXC11O43248 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.22■□□□□ 0.83
HOXC11O43248 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 17.1 ms